Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2111 ATGAGTTGCAACGGTTGCCGAGTGCTTCGAAAGGGCTGCAGCGAAACCTGCGTTTTAAGGTCAAGTCTCCATTGGATTGATTCTCCGGAAGCCCAAGGCAACGCCACTCTGTTTCTCGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTTATCATCAAAGACCTGCTCTGTTTCAGTCTCTGTTATTCGAAGCTTGTGGTCGCACCGTTAACCCAGTTAGCGGAGCCGTTGGTCTCTTGTACAGTGGGAACTGGCACGTTTGTCAAGCGGCGGCGGATACCGTTCTCAACGGCGGAGTTCTCCGCCCGATACCCGGAATTGAAAGTTCTGGAAATCCCATCCCCAACGTCGATGATTCCGCACTTACTTTCAATACCGATGTCTGGACAACCACCACACACAATCTTCAATTTTACCCATCTACTCCGTCCGATTTCCGGTGCCTTCCGGATCTCGCTCTAGGCAGAGCGAAGAATCATCCATTGGAGAATCGGCGGTCTCTTGATTCCGAAGAGTCGGTCATGACCAGCTTCGGAAGCGGCGATCTCGGCGACCAACGGAAAGAGACGAAGCTTTTAAACTTATTCGTCTGA 612 51.47 MSCNGCRVLRKGCSETCVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLYSGNWHVCQAAADTVLNGGVLRPIPGIESSGNPIPNVDDSALTFNTDVWTTTTHNLQFYPSTPSDFRCLPDLALGRAKNHPLENRRSLDSEESVMTSFGSGDLGDQRKETKLLNLFV 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30632392 30633127 - CmPI595203_05g021110.1 Cmu05g2111 417025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2111 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 121 - GO:0010468(PANTHER)
Cmu05g2111 203 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cmu05g2111 203 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cmu05g2111 203 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1693 Cmu-Chr1:30663968 Cmu05g2111 Cmu-Chr5:30632392 6.70E-52 dispersed
Cmu05g2111 Cmu-Chr5:30632392 Cmu05g2328 Cmu-Chr5:32521317 9.00E-37 dispersed
Cmu05g2111 Cmu-Chr5:30632392 Cmu06g1539 Cmu-Chr6:26649842 6.30E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6243 PF03195 LOB 1.30E-23 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2111 - - - 0.0