Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2112 ATGGCTCTTGAAGCTCTGAATTCTCCAACAACTCCATCACCGGCGCTTCACTACGACGACCCAAGCCTCAATTCGTTGGAGTCTTGGTCTAAGAGGAAGAGGACTAAGCGTCCACGTGGTTTCGACAACCCTCCTACAGAGGAAGAGTATTTAGCGCTATGTCTTATCATGCTTGCTCGCGGTGGCGCCACCGCTACTACCGCCGACTCTGACAACCGACTTGAATATGAAGTTCCGATTCCGGCTCAACCCATATCGGTTGTTAAACTTAGCTACAAGTGCTCTGTTTGTAACAAGGCTTTTTCATCTTACCAAGCTTTGGGCGGACATAAAGCCAGCCATAGAAAATCAGCTACAGGGGAAGACCATTCCACTTCCTCCACCACAACTACTTCCGCCACCGCCACCCCCACCGCCTCCGTCGGTGGAGGTAAATCCCACGAGTGCTCTATTTGTCACAAGTCTTTCCCCACCGGTCAAGCCTTAGGCGGCCACAAACGTTGCCACTACGACGGCGGACTCGGTAACAACAACAACAGCAACAATCACATACAGAGTCACAACAACGCCGCCGCCCCCGCCGCTGTGACATCTTCGGAAGGGGTTGGGTCCACCCACACACAGAGTCACAGCCACCGCGACTTTGACCTGAACCTCCCAGCCTTGCCGGAGCTTTCACCGGGATTCTTCATCTCTGCCGGCGACGACGAGGTCCAAAGCCCATTACCTCTGAAGAAGCCTCGTATATTAACAATTCCCAAAATCGAAATTTCTCAAAATTAA 783 52.23 MALEALNSPTTPSPALHYDDPSLNSLESWSKRKRTKRPRGFDNPPTEEEYLALCLIMLARGGATATTADSDNRLEYEVPIPAQPISVVKLSYKCSVCNKAFSSYQALGGHKASHRKSATGEDHSTSSTTTTSATATPTASVGGGKSHECSICHKSFPTGQALGGHKRCHYDGGLGNNNNSNNHIQSHNNAAAPAAVTSSEGVGSTHTQSHSHRDFDLNLPALPELSPGFFISAGDDEVQSPLPLKKPRILTIPKIEISQN 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30645936 30646718 - CmPI595203_05g021120.1 Cmu05g2112 417026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2112 260 MobiDBLite consensus disorder prediction 112 143 - -
Cmu05g2112 260 Pfam C2H2-type zinc finger 147 171 IPR013087 -
Cmu05g2112 260 Pfam C2H2-type zinc finger 92 117 IPR013087 -
Cmu05g2112 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Cmu05g2112 260 Gene3D Classic Zinc Finger 90 169 - -
Cmu05g2112 260 MobiDBLite consensus disorder prediction 1 44 - -
Cmu05g2112 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Cmu05g2112 260 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Cmu05g2112 260 MobiDBLite consensus disorder prediction 122 143 - -
Cmu05g2112 260 MobiDBLite consensus disorder prediction 1 18 - -
Cmu05g2112 260 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Cmu05g2112 260 SUPERFAMILY beta-beta-alpha zinc fingers 92 169 IPR036236 -
Cmu05g2112 260 SMART c2h2final6 147 169 IPR013087 -
Cmu05g2112 260 SMART c2h2final6 92 114 IPR013087 -
Cmu05g2112 260 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 13 224 IPR044653 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0714 Cmu-Chr2:7335046 Cmu05g2112 Cmu-Chr5:30645936 8.60E-50 dispersed
Cmu05g2112 Cmu-Chr5:30645936 Cmu06g1631 Cmu-Chr6:27483420 3.40E-12 dispersed
Cmu05g2112 Cmu-Chr5:30645936 Cmu08g1579 Cmu-Chr8:27511876 1.20E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6244 PF13912 zf-C2H2_6 1.60E-12 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2112 - - - 0.0