Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2113 ATGGATTCTTTCGGAGGTTTCAATGGGGAAGGGGAATGGGATTTATGCAGCTCAATTTTATCATTGGAAGACCTTGATTTTACGCCAATTAATCTCCCTCAACCCACTTCAGGCTTCATGGCTGATGCTTGGTTTTGTTCTTTGGATTCCATCACTGCTAATTTGCCTTCTTGTCATGTTGGTAATGCTATCGATCAATTTCCTTTTATTGCTGCTGCTTCTGATCAACATCATCATCATCACGTGTCCATGTCCATTGAAGAGAATAAGATGGAATCCATTTTCTCAGCTTCTACTACTGACATCTTGCTCCAAGAAATCACTGGCTTTTCGAGTGAAGATAAATTTCTTGACATGGATGCTCAAACCCACCTAGGGGATGATGATCATAATAATGCTACCAATTCTGCAAATGCATTATTCCACCACAAAAGGAAATCCATTGTTGTCGATGATGATCATAACAAGCTCATCAACCCCAATAAGAAAATTCGTAATCCAAACAATGTGCAGAAAAGTAGGAAGGGCAGAGAGTCAAGTGGTAAAAGTAATAGCTCTAGCAAAGAGAAAGTGATGAGCAGTACTCGGCGGCGCAAATGTGAAGAAGAAGAAGAACAGGAAAATGGAGGGTCGTGCGATATGAACAGTTGCACCAGCGATAACTCATCAGAAGATGACAATGCTTCACAAGATACCAATGGCGGTGGCTCTGTTTTAGAGCCACCAAAACCCAAAACAAGAGCCACCAGAGGCTCAGCAACTGATCCACAAAGCCTTTACGCAAGGAAGAGAAGAGAGAGAATCAATGAACGGCTTAGAATTCTGCAGAAGCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAGGAAGCAGTTCATTACGTAAAATTTCTGCAGCTTCAGATAAAGCTTTTGAGCTCTGATGAGCTGTGGATGTATGCCCCAATTGCTTACAATGGGATGGATATTGGTCTGCAGCAGAAGCTTTCTTCATTTTTATGA 1011 41.64 MDSFGGFNGEGEWDLCSSILSLEDLDFTPINLPQPTSGFMADAWFCSLDSITANLPSCHVGNAIDQFPFIAAASDQHHHHHVSMSIEENKMESIFSASTTDILLQEITGFSSEDKFLDMDAQTHLGDDDHNNATNSANALFHHKRKSIVVDDDHNKLINPNKKIRNPNNVQKSRKGRESSGKSNSSSKEKVMSSTRRRKCEEEEEQENGGSCDMNSCTSDNSSEDDNASQDTNGGGSVLEPPKPKTRATRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMYAPIAYNGMDIGLQQKLSSFL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30658726 30660553 + CmPI595203_05g021130.1 Cmu05g2113 417027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2113 336 MobiDBLite consensus disorder prediction 151 264 - -
Cmu05g2113 336 MobiDBLite consensus disorder prediction 210 236 - -
Cmu05g2113 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983(InterPro)
Cmu05g2113 336 SMART finulus 258 307 IPR011598 GO:0046983(InterPro)
Cmu05g2113 336 MobiDBLite consensus disorder prediction 191 205 - -
Cmu05g2113 336 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 312 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2113 336 CDD bHLH_AtIND_like 253 315 - -
Cmu05g2113 336 Gene3D - 254 310 IPR036638 GO:0046983(InterPro)
Cmu05g2113 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 318 IPR036638 GO:0046983(InterPro)
Cmu05g2113 336 Pfam Helix-loop-helix DNA-binding domain 262 302 IPR011598 GO:0046983(InterPro)
Cmu05g2113 336 FunFam Basic helix-loop-helix transcription factor 253 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0719 Cmu-Chr2:7388562 Cmu05g2113 Cmu-Chr5:30658726 8.30E-37 dispersed
Cmu05g2113 Cmu-Chr5:30658726 Cmu10g1823 Cmu-Chr10:22880395 1.60E-38 dispersed
Cmu03g1460 Cmu-Chr3:10444913 Cmu05g2113 Cmu-Chr5:30658726 1.60E-18 transposed
Cmu05g2113 Cmu-Chr5:30658726 Cmu08g1581 Cmu-Chr8:27534667 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6245 PF00010 HLH 1.00E-08 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2113 - - - 0.0