Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2114 ATGGCCTCGGCGGAGCAGCCTCTCAAGAAGCGCCGGAACTACGGACCACTCGCTCCAGAACCACCGCCCCTACTTCACCAGTTGCCTCAGCCACCGCCACCGCAAATTCCAGTGATGGACCAGACTTCCGCCGCTCCATCGCCTCCCACTCCACCTCAACTGTCCCAAGCCGAAATCCTCCTCAGGAGAAGGAATAGAGATGAGATTAGAAGCGTCTATGAATGTTTTAAGCGAATCAGGTTTTTCCTTTCGCAGAAAGAGAAGGGCGCTCCCACACCTGATATCGAGCAGGCATATCTTTCTCTCATTACTGCTTCGAGAGGGTGCACCAGTGTAAAGCGTATTGTGGCTGACTTTATTCCTCGCTATGCACCTCATTGTCCAACTGCTCTGGAAGCTGCAACAAAAGTTATCATCAATATGCATAATCAGAGCTTGGAAATAATAAATAATGGGGAGGATGTTGATAATGTTGCGTTTGAGACAGCAAGTGCTTGTATTATTGGTTTAGTTGATATTTGTGCTGCTGTAATATCTAAGGCGCATACATCATCTGTCATCAGAGGCATTTGCTTTGAAGTCTTTCAGAATGTTTTCACCTTCTTTGTGTCATCTTTTGAGGGAAAAGATATATTTCAGATTGTAGATAAAGAAGCTCTTAAAATTCAAGATTCTGCAGATGTTTTCACTGAGTTAAAGCAGAATTATACTGATGAAAATATTTTGCCTGTGATTAAACTATCCAAGTTACGTGCTATCAGTCTCCTCTGGCTATTTTTTCATTACCCTAAAAACTTAGCTGCAGCTTGTTTTGAGCTTTTCAATATGTCTGCTGAGGGAACTCACAAGGACGGGCAGTATTTTCTAAGTCAGATTATACTTGGGCTGGATGATGACATCACCCATCATTTCGATAAAAGAAGTGACAACAAGACAAGCCCTAAATACTGCAAGGATGATGTTAAGGAGCAAGTTTCAGTCAGTAGCCACACCTCTGTTGATGCATCATCTGTTTCAAGGAACTGCATGTTGAGCTTGGTCCTTGGAAAGGATCAATTATTCCGAAACTGGATGATTACGCAGTATAAGAGGCTCTGTGACCTGCCATCCTTTAGAGCTTTAGCAGATGTAAGATCTGCTCTGGAAGGAATTTTTGAATCATTTTCCGAGTTAATGAACAACGAAGATAATCAAGTGAATATGGATGAGGAAATGTCTGATTCCTTGAAGCATTCTACTCGTAATAGATGTGAAATTTCCATGGAACTATCCGATAAAAGGAGAAAATTGAGGTATTGTGATTCCCTTGAAGATGGTGTCAATGAAAAAGTTTCTGGTCAACATCGTTCGTCAATTCCTCTTGATGGTAAGCACACCACGTGTTCTGATTTTGATGCTGGCAGCATGAGACCCATGGCCTTTGATGTTCAGGAGCCTGGAGGTTTGCTACATGGCAGTTTGCCCCAGTCCCAGGATCCTTTGAGCAAGCACGATCATTTGTCTTATGCAAAAACATCATCAGACCTGCAGAACAATTCTTTTGAATGTACAAAGCATTCAATTGATGGCAATCAAGTTTCAAGTGTTGATCGGAACTTTCCTGCTCAGAGATTGGCTACTGGAGATATCAATAATGATCTTGTGCCTCCTAGACATCAGCTATCAGTGCCATGTAGATCTACAACTTCTCAGAGTTTGTGGTTTTCTGATGGAGATCCATCAGCCATGGATATCTTCTCTGCTTCCAAACAACTATGGGTGGGTCTGTTAGGCCCTGAGACATCTGAAGCTCACATAAGGTATCAATTTGAGAGGTTTGGTTACATTGAACATTTTTTCTTCTTTCCATTAAAAAGGTTTGCAGTAGTGGAGTATGGTCACATCATTGATGCCATAAGGGCACGTGAATATATGCGTGGACAATTTCAATGGTGTGTAAAATTCATGGATATTGGTTTGGGAACTAGGGGTTCCGTGCACGGGGTTGCAATTGGTTCCAGTTTTCATGTTTATGTTGGAAATGTTTTGAGCTACTGGGGGAAGGATGAGATTCTGCATGAGACAAGGAAAGTGCTTAACAAGGGTCCATACATGGTCTCTGATCTTGGCAACGAGGGTGCATTGCTGATGGAATTTGAGACTCCAGAAGAAGCTACACTTGTGATGGCACATCTCAGACAACATCGAAGGGAAAAGAATATTCACTGGCCTCCTCCAAATGCAGGACAAACGAATATTGCACCGCCCTATTTAGATGGTGGAAGATCTGCTTGTGCCTCTACTGGTGGTAACATCAGAAGCACCAATCCTGTGAACATGCCCAATAGTATGGTTGGGTCACCTCATGCTCCGATGGTGCCAGAGAGTCCTAACTTGAGGACAAGAATGTCAGAGCTATCTTCCTTACTTTATACACTGCGTGCAAAATACAACATCAATCAAAACTCAAGTTATTTTGAAAACTACATATCTGGAAGTTGCAATACTTCAATGAGGGAAGAAGACAGAACTCCTACTAGCACTCTCTGGATTTCTTTTCCAAATTTTAATTCTCCTTTTGTCACTGATGAGGAATTGATGAAGATCTGTAATCTTGCCATGACCAACACTGGGTCTGTTGTGAGGATGACTCGAGCAAGTGTACAGGTGGGCTGTGGTTGGTTTGTTGAGTGCAGTAGTGTAGATGCTGCAATAACCATCTTGAAGAATCTCCGTGGTTGTCCTGGAATTTTTCTTCGAATAGAATTCAGTAAACCAGGAAGGTTCCATGCGGCACCTTTTCTGAGGCATGATAGTTGTGCTATGGATCATCCATCTCCCAGAATATTACATGAGAATCATGCAATACCACCTCAACAAGGTGGATATTCCTATCAGTCAAACTGGGCTCCTTCCGGTGGTCATACAGAAATGCTTGAAATAGGGGTCGGAAAGACTGATGCTTGTGAAAAAAACCTGCTGATAGATCATCCACAAGGTGGCCACATAGCCTCTGGAACCATTCCATGCTTGCCCATATCAACAATGGGACCTCCTGCCCCACCACCTCCACCACAGATTCAGCCACCTCCATTTGTTCGATCTCCATACCCTCCTCCAAACAGTTCTTGGGATGCAAGGGGTTTAAACCATCCTTTGCCTTTACATCCAATATCACCAAGTGTTATACCTAATAATTTTCCGGGTAATTCTGTTGCATGCCCTCCGTTTTTACCTGCTTCTGTGACACCCCTTGCTCAGATACAAGGAACTCCAATGCAGCAGCATCTAGACCATGTTTTTCCTCATCCTGTTGCGCCACCATCAATATCTCTACCACCTTCCCGGCCCGAGATGCCTCCTCCCATGCCTTCATCTCCACCACCTTTGCCTCACTCACAACCGCCTAATATTCCTCCTCCACCCAGTTCTCCTCCGCCTCCACCTCCACCCCTAGCTGCCACAGGAACTAGTGAAGTGAAAAATTGTAGCCAGCATGTTCTATATCAATGGCAAGGAGCACTTTGTAAAAGTGGAGTTCAGTACTGTACAATTTATGCAAAAAGAGTGGATTCCCAAACTTGCAAATACTTAAATGCTGGTCCAGAACCTATTGAGTGGCCTGCAAAATTAGATATGACCAAACGCACAGATTTTAGGCATGTGAAGACGACATTCACCAGCACTTCACCAAGTAAAAGGGAGATATGTCAGCTGATCCCATCTTCTGGTGGAGACCATAAAGGATTTCAAGATTTTGTATCGTATTTGAAGCAGAGGGATTGCGCAGGAGTCATAAAAATACCGGCCACTAAATTGCTATGGACCAGGCTTCTCTTCATACTTCCATATTCACAGGACTCGTGTTCTCTGCTCTCAATTCCACCAGGCCCACCAGATAGCCTGATTGCCTTGGTTCTTCCTAAAGAAACAAACTTCGAATGGCGGGATCAACTTGAGGACTGTTCTGTTCAAGAATGTTCTTGTTCATGCAGTTCTCAAAGACTCAAGATTTGCTCGTCGGAGTCCAAAGTGGAATTCCAAACCCAAGTTCGGTTTGGCAGTCGGCAGCCACCAATTACAAAGCCAAAGAAAGGTATAAATTACAAAGCCAACCGATTCGTCTTCCTCTTCCTCCTCTCCACCCGGCGCTTTCTTCTTCCTATCCGATCACCAACGAAGTCATCTGAATTCAGAATGTCTAATCGTTACAATCACGATGGAAACAAGGGTTTAAGGAAAGACCAGAAGAAGTACATCCCCAAGAATCAAAATCAATCCACAAATGAACTCCCCAACCCTAAACCTACCCTTTCCACTTCTCTCAGACAATCGCTGCCTAAACCATCCGATTCTGCTGCTGTTACCACTTCTGCCGCGCCATCAATGAGTCGGATTCAGATGGGTGCGAATGGAGATTGGGTGTCTAGCAGAGCTAGTGGTGGCAGTTTCGTGAATTACTTGCCACAGGACGAGGCCGTTGCCACTGGTCTTCGTGCCGAAGAAGGAGCATTGGATCCGGTGGAATCTCAAAGAGTCGTAGACCTTTTAAACAGAGAGTTGTCTCGGCTGCTCAAGTTGAGTGCTAAAGAGTTTTGGAGGGAAGTGGCTATGGATACTTCCTTGCTTGAATTTCTCGACAGCTTCCTAAAATTCAGGAGTAGATGGTATGATTTTCCACATCGTGGAGCAAATGGAATAGTTGCAGGGGTCATAGTTGGAGAATATGAATTAAGCCGCCGTGTTTTCATGGTATTATATCGCATGTCTTCCAATAGGGATCCTGGTGCACGAGCTGCTGATAGCCTCAGTTTGAAAGATCATGGAGTCCTTCTGCAGGGAAAGAAGTTGCTTGACCTTCCAAAGTTACTTGATATATGTGCTATATATAGTCATGAGAATGAAGATCTAACTAGAATACTGGTTGAGAATGCTATAAAATCCCAGCCTAGTATTCATGAAACTTTATCGTCAGTTATATCTCACTTCCTCAGCATTGCCTCTATGATGCATCAAAGGTGCAACTCATCTCTTGAGACTCTCTTCTCCTCGAGTAGCCATGGAGGAAGTGGGTACAGTAAGCTTCAAGCTGACTTCTTGGAGGTGATAGATTTTATCAATGATGCAATTGTCACTCTGGACTCTTTCGTCACTGCATACAGACTGGCAGCTATATTCTTCTCCTCTGCAGTTGAAATAAGCTGCGGGAATGAGGATTTGCTGGGAACTCTTGCAAGGTTGCATGATTTACTACTTCCATCTTTACAGCAGGGATTTCAAATTGTCCTTGTGCCCCAAGGAGATGAAATGATGTCTAATGTTGCAACAAGTTTGAAAATGCTAGCATTAAGAATTGTGAGTCTTGGTTGGAAACTGCTGGAAATCTGCTATCTAGGTGACGAAGTGTTTGGAAATGACCTCCCTGTTCCAGTCTCTATGAAGATGTTCCCTGCAACTGTCGAAGATCCTGTCATAAGAGCAGATATCTTGATTCAAACTTTACGAGAAATCAATGGAATCTCGCAACAGGCTTCAGATAAACAACTTGCTCAAACATTTCTTCAGCGTATGGAAAAGAACCACTCCATAATGAACAGAATCAACAGTTTACGAAACAATGGATGGATATTTGTCGATGATGAACAATTTGATTATCTATCAACAATTGTTATGTATACCCCCACGTCTGATATTAAGGATCCATCTCTTTCTAAGGCCCCTGTGATGAGCCACATATCAGAAGTAGATGAGGATGCTGCAATGTTGGAGTCGAAAATCTGCCAAATAAAGGATCTTTTCCCTGAGTATGGCAGTGGGTTTCTAGCTGCATGTCTGGTAGCTTATAATCAGAACCCTGAAGAAGTGGTTCAAGGAATACTTGAGGGAACTCTTCATTCTGATCTTCAGTCCTTGGACACTTCCTTAGAAACAATGCCAGTACCCAATTCTAGTGCGACTGCTAATAATAGGAACGACAAAGGAAAAGGAAAACTGTTCGAGTCTTCAACAGTTGATTACACTGACCAAGTTTCTCGTGGTAAAGATTCACTGTCTGAAGGCCCTTCAGTTTCATCACCTTCTGTTGGCAGATTTTTTCGAAAGTCTAAAGATGACATGCCGTACTCAGAGACCCTTGACAATAGAAATGAAGCAGATCCAGTGAGGACTGCAGCTTTAATTTCTCAATATGAGTATGAAGATGAGTATGATGACTCTTTTGATGATCTTGGTATTAGCATAGCAGAGACAGCTACAGAAGATAATGAAGACTTGGTAAAGCTAAGTTCCCATTTAGGTAGCTCATCGAACTCAACAAATGGAAGTTCAGTGCAAAATGCTCCCAACTCAAAGTGGGGATCTAGAAGAAAACCACAATACTATGTCAAGGATGGTAAGAATTATAGTTACAAAGTTGCAGGGTCAGTTGCGGTTGCCAATTCTGATGAGGCATCTTTAGTAACTCAAGCTCAGAAAGAACTCATTTATGGACTTGGACGCGGAGGCAACTTACCTCTCGGGGCAGTAAAAAAGCTGACAGAATCTGAGCAGGATAGCCAACCCGATGTTTCTGAAGTAGATCCAAGAGATAATGTACGGAAGTCTTGGGGCAGAGGAAGGAGGGAAAGGGAAAGTGGAACAGCTGCAGGCATGCCTGAAGGGCAAGGTAAACAACCAATTGTGGCTGAGGTTTCAGAGAGGGGAGGAAGAGGTGGCAACCGAGGCCGTGGAAGGAGAGGAGGGGGCGACCATCACAGGAAGGATAGAGCCATGAAAAAGCATTTTGCTGGATTGTCTGGTTTCTAA 6783 43.55 MASAEQPLKKRRNYGPLAPEPPPLLHQLPQPPPPQIPVMDQTSAAPSPPTPPQLSQAEILLRRRNRDEIRSVYECFKRIRFFLSQKEKGAPTPDIEQAYLSLITASRGCTSVKRIVADFIPRYAPHCPTALEAATKVIINMHNQSLEIINNGEDVDNVAFETASACIIGLVDICAAVISKAHTSSVIRGICFEVFQNVFTFFVSSFEGKDIFQIVDKEALKIQDSADVFTELKQNYTDENILPVIKLSKLRAISLLWLFFHYPKNLAAACFELFNMSAEGTHKDGQYFLSQIILGLDDDITHHFDKRSDNKTSPKYCKDDVKEQVSVSSHTSVDASSVSRNCMLSLVLGKDQLFRNWMITQYKRLCDLPSFRALADVRSALEGIFESFSELMNNEDNQVNMDEEMSDSLKHSTRNRCEISMELSDKRRKLRYCDSLEDGVNEKVSGQHRSSIPLDGKHTTCSDFDAGSMRPMAFDVQEPGGLLHGSLPQSQDPLSKHDHLSYAKTSSDLQNNSFECTKHSIDGNQVSSVDRNFPAQRLATGDINNDLVPPRHQLSVPCRSTTSQSLWFSDGDPSAMDIFSASKQLWVGLLGPETSEAHIRYQFERFGYIEHFFFFPLKRFAVVEYGHIIDAIRAREYMRGQFQWCVKFMDIGLGTRGSVHGVAIGSSFHVYVGNVLSYWGKDEILHETRKVLNKGPYMVSDLGNEGALLMEFETPEEATLVMAHLRQHRREKNIHWPPPNAGQTNIAPPYLDGGRSACASTGGNIRSTNPVNMPNSMVGSPHAPMVPESPNLRTRMSELSSLLYTLRAKYNINQNSSYFENYISGSCNTSMREEDRTPTSTLWISFPNFNSPFVTDEELMKICNLAMTNTGSVVRMTRASVQVGCGWFVECSSVDAAITILKNLRGCPGIFLRIEFSKPGRFHAAPFLRHDSCAMDHPSPRILHENHAIPPQQGGYSYQSNWAPSGGHTEMLEIGVGKTDACEKNLLIDHPQGGHIASGTIPCLPISTMGPPAPPPPPQIQPPPFVRSPYPPPNSSWDARGLNHPLPLHPISPSVIPNNFPGNSVACPPFLPASVTPLAQIQGTPMQQHLDHVFPHPVAPPSISLPPSRPEMPPPMPSSPPPLPHSQPPNIPPPPSSPPPPPPPLAATGTSEVKNCSQHVLYQWQGALCKSGVQYCTIYAKRVDSQTCKYLNAGPEPIEWPAKLDMTKRTDFRHVKTTFTSTSPSKREICQLIPSSGGDHKGFQDFVSYLKQRDCAGVIKIPATKLLWTRLLFILPYSQDSCSLLSIPPGPPDSLIALVLPKETNFEWRDQLEDCSVQECSCSCSSQRLKICSSESKVEFQTQVRFGSRQPPITKPKKGINYKANRFVFLFLLSTRRFLLPIRSPTKSSEFRMSNRYNHDGNKGLRKDQKKYIPKNQNQSTNELPNPKPTLSTSLRQSLPKPSDSAAVTTSAAPSMSRIQMGANGDWVSSRASGGSFVNYLPQDEAVATGLRAEEGALDPVESQRVVDLLNRELSRLLKLSAKEFWREVAMDTSLLEFLDSFLKFRSRWYDFPHRGANGIVAGVIVGEYELSRRVFMVLYRMSSNRDPGARAADSLSLKDHGVLLQGKKLLDLPKLLDICAIYSHENEDLTRILVENAIKSQPSIHETLSSVISHFLSIASMMHQRCNSSLETLFSSSSHGGSGYSKLQADFLEVIDFINDAIVTLDSFVTAYRLAAIFFSSAVEISCGNEDLLGTLARLHDLLLPSLQQGFQIVLVPQGDEMMSNVATSLKMLALRIVSLGWKLLEICYLGDEVFGNDLPVPVSMKMFPATVEDPVIRADILIQTLREINGISQQASDKQLAQTFLQRMEKNHSIMNRINSLRNNGWIFVDDEQFDYLSTIVMYTPTSDIKDPSLSKAPVMSHISEVDEDAAMLESKICQIKDLFPEYGSGFLAACLVAYNQNPEEVVQGILEGTLHSDLQSLDTSLETMPVPNSSATANNRNDKGKGKLFESSTVDYTDQVSRGKDSLSEGPSVSSPSVGRFFRKSKDDMPYSETLDNRNEADPVRTAALISQYEYEDEYDDSFDDLGISIAETATEDNEDLVKLSSHLGSSSNSTNGSSVQNAPNSKWGSRRKPQYYVKDGKNYSYKVAGSVAVANSDEASLVTQAQKELIYGLGRGGNLPLGAVKKLTESEQDSQPDVSEVDPRDNVRKSWGRGRRERESGTAAGMPEGQGKQPIVAEVSERGGRGGNRGRGRRGGGDHHRKDRAMKKHFAGLSGF 2260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30662697 30679222 + CmPI595203_05g021140.1 Cmu05g2114 417028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2114 2260 Gene3D - 1913 1957 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 2089 2112 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 1995 2022 - -
Cmu05g2114 2260 ProSiteProfiles CUE domain profile. 1914 1957 IPR003892 GO:0043130(InterPro)
Cmu05g2114 2260 Gene3D - 574 656 IPR012677 -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 16 53 - -
Cmu05g2114 2260 CDD SPOC_FPA-like 1163 1301 - -
Cmu05g2114 2260 Pfam SPOC domain 1162 1300 IPR012921 -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 2171 2260 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 1416 1454 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 2024 2043 - -
Cmu05g2114 2260 SMART cue_7 1914 1956 IPR003892 GO:0043130(InterPro)
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 1099 1147 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 2089 2116 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 1971 2043 - -
Cmu05g2114 2260 CDD CUE_ASCC2 1916 1955 IPR041800 -
Cmu05g2114 2260 CDD RRM_SF 585 642 - -
Cmu05g2114 2260 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 1392 2260 IPR052586 GO:0043130(PANTHER)
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 1091 1150 - -
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 1 57 - -
Cmu05g2114 2260 Pfam CUE domain 1918 1956 IPR003892 GO:0043130(InterPro)
Cmu05g2114 2260 SUPERFAMILY RNA-binding domain, RBD 569 642 IPR035979 GO:0003676(InterPro)
Cmu05g2114 2260 SUPERFAMILY UBA-like 1914 1972 IPR009060 GO:0005515(InterPro)
Cmu05g2114 2260 MobiDBLite consensus disorder prediction 2174 2206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2114 K18667 - - csv:101209442 2276.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g657 . Blo12g00984 . Bda03g00185 . Bpe04g00160 . . . . Cma01g01790 Cma09g00286 . . . Cpe06g00196 . . . . . . . . . . . . . . . Cone4ag1611 Cone7ag1341 . . . Csa04g02474 . . . . . . . . . . . Cmo01g01848 Cmo09g00277 . . . Car09g00240 . Cpe02g00217 Bhi09g03233 Tan01g4699 . . . Mch11g0359 . Cla05g02103 Cam05g2255 Cec05g2275 Cco05g2316 Clacu05g2251 Cmu05g2114 Cre05g2238 . . Chy07g00186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002598 2 3 2 1 2 1 2 1 1 2 1 1 2 1 2 3 1 4 2 1 2 2 2 2 2 1 1 3 7 2 59