Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2138 ATGGGCGTTGTTTGTTGGCTTCTGGGGGAAGTGGTTTGGAACTTTGGATGGATTGAAGTGAAGGATTTATGTTGCTTTTCTGCTACTTTCTGCTGGTTTCTTCTCTTAATCTGTACTTTAATGGCAGGAATGTTTAATGGGGAGGGATCGTCGTCGGTAACTTCGTCGCCTTTGCAGTTCTTTCCATGGTCGTTATCGCCCGGTATAGGGTCACCATACCCTTTTCTAAGGGAGCTCAAATCTGAAGAGAGGGGGTTGTGTCTGATTCACCTTCTTCTTGCCTGTGCCAATCAAGTTGCTATTGGTAACATTGAAAATGCTAATGTTGGCCTGGAGCAAATTTCCCACCTTGCTTCACCCGACGGGGACACAATGCAGCGGATTGCTGCCTACTTCACCGAGGCACTCGCTGACCGGATACTCAAATCCTGGCCTGGCTTACACAAAGCCTTGAACTCTACCAAAATATTGTCAGTCCCTGAAGAGATTCTTGCTCAGAGATTGTTCTTTGAACTATGTCCTTTCTTGAAGCTTGCTTATGTGATAACTAATCAGGCTATTATAGAAGCTATGGAGGGAGAAAGGATGATTCATATTATTGATTTCAAATCTTGTGAACCTGCTCAGTGGATAAACCTTCTTCAAACATTGAAAGATAGGCCAGATGGTCCACCCCACTTGAGAATAACTGGAATTCATGAACAAAAAGAGGTGTTGGAACAAATGGCTCTTCGGCTTACCGAAGAGGCCGAAAAATGGGATATACCATTTCAATTCACCCCAGTTGTTAGCAAATTAGAAAACCTTGACCTTGAAAGTTTAAAGGTCAAGACAGGTGAAGCACTTGCAGTTAGCTCCGTACTTGAACTTCACTCGGTTTTGGCTACAGACGACGATAAGAAAACGTCACCATCTGCATCGAAGAACTTGCAAAAACTCCTACGTATGAAGCAGCGAACACTCGGAGAGTGGCTCGAGACAGATTCGTTGCAAGTTTTTGGTAGTCCTGATTCGGCCTCAGTATCTTCCCCATCAGGATTGAATCCTTCCCAAAAGATGAACAGTTTTTTGACTGCGCTATGGGGCCTTTCTCCAAAAGTTATGGTAATAACTGAACAAGAATCAAACCTGAATGGATCTGCTTTCATGGAGAGAGTACTAGAAGCATTAAACTTCTATGCCGCATTGTTTGATTGCTTAGAGTCAACCGTGTCGAGATCATCGATCGAGCGACAAAGGGTCGAGAAGATGCTTTTAGGAGAGGAAATAAAAAACATCATTGCTTGTGAGGGGGTGGAGAGGACAGAGAGGCACGAAAAGCTCGAGAGATGGATACTGAGGCTCGAATCCGTGGGGTTCGGAAAGGTTCCATTGAGTTATCATACCGCACCGATCACATCTCTTATTTTTCCCCTCTGCCGTTGCCGACGCCGATCGCCGATCGCCGATCGCCGCCACGCCTCCACCGCCATTTTTCTTTCTCACTGTCTGCTGCAGGCTCACGCCGCCACCACTCCAACCCCGTTTTCCCTCTCTCCTGAGGTGCCCCGTTTCTACACCAATCTCAATCTAACCTACTCGCCGTCCGCCCCATCTCTCAGTGATCAGTATCTGCACGCACGGCCTGCGTTTCTTCCAACACATTCATCTCCTTCTCTCTTGATGGAGGGTTCCATTGCTGAAGAACTTTATTCCGAGAGTTTACAGTCAACAAAATCAAAATTGGGTGATTTGTCATTATCTGATTACAGACAAAATCGGCCGTCAGGTTCTGGTGTGGATGACTCGTGCGAAGATGACGGATCTTTATGGGGTGGTTCTGATGAAGGCTTGGAGGAAACAACTGATTTGGACAGGGAGTGGCAGAGAAGACATGACCAATTTCATACGATTGGATACCGCGATGGTTTAATTGCTGGGAAAGAAGCTGCAGCTCAAGAGGGATTTAATGTTGGCTTCAAGCAGTCAGTCGCTGTCGGATATAAGTTGGGTCTTGTCAGAGGTGTTAGCAGTGTGCTTGCTTCCCTTCCTGATGACTTGAAAGAGAAGCTAGCAGGAACTGAAGAGAACCGAAGAAAATTTCAAAGCTTGTATGAATCTGTGAACTCTCTTTCGACAGTAGATGCACTTAGGCTATTCAATGATGATATTACGGCACAGCGCACAAAAGAAGAGCGTGTAAATGAAAATACAAATTCCCAAACAAAGGATTTGTCGAAGCAAAATTCAGATTATGGTCGTCTAAGAAAGTTCTATGGAGAGCTTGAAGCACTTCTACCCAAATCACCTGCTCTGAATCTTCATTTACATGAAGAACAGTAG 2322 45.26 MGVVCWLLGEVVWNFGWIEVKDLCCFSATFCWFLLLICTLMAGMFNGEGSSSVTSSPLQFFPWSLSPGIGSPYPFLRELKSEERGLCLIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKILSVPEEILAQRLFFELCPFLKLAYVITNQAIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHEQKEVLEQMALRLTEEAEKWDIPFQFTPVVSKLENLDLESLKVKTGEALAVSSVLELHSVLATDDDKKTSPSASKNLQKLLRMKQRTLGEWLETDSLQVFGSPDSASVSSPSGLNPSQKMNSFLTALWGLSPKVMVITEQESNLNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHTAPITSLIFPLCRCRRRSPIADRRHASTAIFLSHCLLQAHAATTPTPFSLSPEVPRFYTNLNLTYSPSAPSLSDQYLHARPAFLPTHSSPSLLMEGSIAEELYSESLQSTKSKLGDLSLSDYRQNRPSGSGVDDSCEDDGSLWGGSDEGLEETTDLDREWQRRHDQFHTIGYRDGLIAGKEAAAQEGFNVGFKQSVAVGYKLGLVRGVSSVLASLPDDLKEKLAGTEENRRKFQSLYESVNSLSTVDALRLFNDDITAQRTKEERVNENTNSQTKDLSKQNSDYGRLRKFYGELEALLPKSPALNLHLHEEQ 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 30842798 30850945 - CmPI595203_05g021380.1 Cmu05g2138 417052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2138 773 Pfam Essential protein Yae1, N terminal 632 669 IPR019191 -
Cmu05g2138 773 Pfam GRAS domain family 88 463 IPR005202 -
Cmu05g2138 773 ProSiteProfiles GRAS family profile. 79 504 IPR005202 -
Cmu05g2138 773 MobiDBLite consensus disorder prediction 580 612 - -
Cmu05g2138 773 MobiDBLite consensus disorder prediction 723 742 - -
Cmu05g2138 773 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 83 462 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1906 Cmu-Chr3:26282693 Cmu05g2138 Cmu-Chr5:30842798 1.50E-146 dispersed
Cmu05g2138 Cmu-Chr5:30842798 Cmu11g0954 Cmu-Chr11:13186053 1.30E-54 dispersed
Cmu05g2138 Cmu-Chr5:30842798 Cmu03g0756 Cmu-Chr3:1730486 5.70E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6248 PF03514 GRAS 3.70E-118 CL0063 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2138 - - - 0.0