Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2155 ATGGCCAAAGACGACGCCACCGCCGCGCGACGGTTCTCCGGCAAGGACTACCACGACCCTCCGCCGGCGCCGCTGTTCGACGCGGCGGAGCTCAGCAAGTGGTCCTTTTACAGGGCCCTCATTGCCGAGTTCATTGCCACTCTTCTTTTTCTCTATGTCACCATATTGACTGTGATTGGCTACAGCAGCCAGACCGATACCAGTAAGCCCGGCGCCGACGCTTGCGATGGCGTCGGCATCCTCGGCATCGCTTGGTCCTTCGGCGGCATGATCTTCGTCCTTGTCTACTGCACTGCCGGCATTTCAGGTGGGCACATAAACCCGGCGGTGACGTTCGGGCTATTCTTGGCCCGTAAAGTGTCGTTGGTGCGGGCAGTGGCGTACATGGTGGCTCAGTGCTTAGGAGCCATATGCGGGACGGGGCTAGTGAAAGCGTTCCAAAAGGCTTACTTCAACAAGTACGGCGGCGGTGCGAACCAGCTCGCCCATGGCTACACCAAAGGCACCGGCTTGGGTGCTGAAATCGTTGGTACCTTTATCTTGGTTTACACCGTCTTCTCCGCCACTGATCCCAAGAGAAACGCCAGAGACTCCCATGTTCCTGTATTGGCTCCCCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCCACCATCCCCATTACCGGCACAAGCATCAACCCTGCAAGAAGCTTCGGCCCTGCTGTTATCTTAAACAAGGATAAACCTTGGGATGAACATTGGATATTCTGGGTTGGGCCATTCGTCGGAGCCGCCATCGCAGCCTTCTACCATCAGTTCATTTTGAGGGCCGGCGCCGCCAAGGCTCTCGGCTCTTTCAGGAGCACCCCCTCCAATGTTCCAGTTCTGTTTCTTTTGGCCAACGAGTACTTGAATTCTGCTCAGAAGTCCTCCTGCTTCTCTCCTGTTGTTACTGCTGCTATTGCTGCGGAGCTTGCCTCTCCGAAGAAGAAGAACATTAATGTTGATGAAGAATAG 1002 55.29 MAKDDATAARRFSGKDYHDPPPAPLFDAAELSKWSFYRALIAEFIATLLFLYVTILTVIGYSSQTDTSKPGADACDGVGILGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAICGTGLVKAFQKAYFNKYGGGANQLAHGYTKGTGLGAEIVGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTSINPARSFGPAVILNKDKPWDEHWIFWVGPFVGAAIAAFYHQFILRAGAAKALGSFRSTPSNVPVLFLLANEYLNSAQKSSCFSPVVTAAIAAELASPKKKNINVDEE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31031396 31039597 - CmPI595203_05g021550.1 Cmu05g2155 417069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2155 333 CDD MIP 38 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 NCBIfam MIP family channel protein 42 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 Gene3D Glycerol uptake facilitator protein. 23 287 IPR023271 -
Cmu05g2155 333 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cmu05g2155 333 FunFam Probable aquaporin PIP1-2 23 285 - -
Cmu05g2155 333 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cmu05g2155 333 Pfam Major intrinsic protein 30 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu05g2155 333 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0425 Cmu-Chr2:3874388 Cmu05g2155 Cmu-Chr5:31031396 1.90E-122 dispersed
Cmu04g0932 Cmu-Chr4:23772236 Cmu05g2155 Cmu-Chr5:31031396 9.40E-133 dispersed
Cmu04g0933 Cmu-Chr4:23782880 Cmu05g2155 Cmu-Chr5:31031396 1.20E-132 dispersed
Cmu04g0978 Cmu-Chr4:24221808 Cmu05g2155 Cmu-Chr5:31031396 2.50E-28 dispersed
Cmu05g2155 Cmu-Chr5:31031396 Cmu07g0449 Cmu-Chr7:4760665 2.50E-108 dispersed
Cmu10g2754 Cmu-Chr10:34169189 Cmu05g2155 Cmu-Chr5:31031396 9.70E-117 wgd
Cmu05g2155 Cmu-Chr5:31031396 Cmu08g0692 Cmu-Chr8:19228752 2.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2155 K09872 - csv:101204956 553.903