Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2187 ATGGGCTGCGGCTGCGCCGCCCTTTCCAATTCAGCCGGCGGCTCCGGCATCCACCACTCACGAGCCCCATTTGAAAACAGAGAAAAGATATCACAGAACAAAGCTGTCAGAAACATCCTCGAGTTCCTCATTGTACCTTTGAGGATGTTTCCTGTTCTTAGCATTCTCTTGATATGGATGTCTGCTTCAATCTTTGGTGTTGCTTCTGGTTCTTTCAATCTTACATTACCCCATCAGCATCCTGACCCTGATTCTGTTGCTGATGAACTTCAAAGGACAGTGAATGCATCTGTATGGAGAAGACAAATGCTGTCCGTCGAATCAAAGGATCAAACTTTCTCTTGTCTCACCGGAAACCCCATCGATGATTGCTGGCGGTGCGACCCGAATTGGGCGGCAAACCGACAGCGACTGGCCGACTGCGGTATCGGGTTCGGCCGGGATGCCATGGGTGGCAAAGGCGGAAAGATCTACATCGTTACCGACTCGTCGGATTTGGATCCGGCGAACCCTACTCCGGGGACTCTCCGGCACGCTGTGATCCAATTCGAACCGCTGTGGATCATCTTCTCCGCCGACATGACTATCAAGCTGAAATACGAGCTTATCATTAACAGTTTCAAAACGATCGACGGCCGTGGAGCCAACGTCCACATCACCGGCGGCGGATGCATCACCATTCAATACGTGTCCAATGTCATCATCCACAACATCCACGTGCACCACTGTAAACCCTCCGGCAATGCCAACATAAGATCGACCCCAACTCACGTGGGGCATAGAGGGCTATCAGACGGAGATGGGATCTCAATTTTTAGCTCAAGAAAGATATGGATCGATCATTGCTCATTGTCATACTGCACAGATGGGCTAATAGACGCAATAATGGGATCAACAGGAATTACAATATCAAATAGCTACTTCTCGCACCATGATGAAGTGATGTTGTTAGGGCACGACGATCGGTATGTGCAAGACTCGGGGATGCAAGTCACCATTGCCTTCAACCACTTTGGCGAGGCATTAGTCCAACGCATGCCCCGTTGTAGACATGGCTACATTCACGTCGTCAACAATGACTTCACTGCTTGGGAAATGTATGCCATTGGAGGTAGTGCCCAACCCACTATTAACAGCCAAGGCAATCGCTACACCGCTCCTGTGGACCCCAATGCCAAAGAGGTGACGAGACGTTTAGACGCGGCGGAGACGGAGTGGGCGGGGTGGAATTGGCGGACGGACGGCGACATTTTGGTGAACGGCGCGTTTTTTGTACCTTCCGGTGCCGGACTTAGCACCCAGTACGGTAAGGCTTCCAGCGTGGAGCCTAAGTCTGTGGCTCTCATCAATCAACTCACTATGAACGCCGGTGTTTTGGGCGCCCCCAGGTATAATGCTGGTCAAGGAATTGTATATCCGGGATTCAGCGGTGGGAATGGTGGGAATGGTGATGAGGGATATGGGGGTAATACTGTCATAAATAATAGTCCAATTTATGAAAATGGTGGTGGTAATGGTAATGATGATTACTACGGCATGATATTTAAAGCTGGTGGTTATAGAGTATTGCCAATATTGCCCTCCATAAACTTATGTACTCAAATTCTATTACTTTTGTACATAGTCACAAATTATAGTGGCCTATTCACATTATAG 1656 49.09 MGCGCAALSNSAGGSGIHHSRAPFENREKISQNKAVRNILEFLIVPLRMFPVLSILLIWMSASIFGVASGSFNLTLPHQHPDPDSVADELQRTVNASVWRRQMLSVESKDQTFSCLTGNPIDDCWRCDPNWAANRQRLADCGIGFGRDAMGGKGGKIYIVTDSSDLDPANPTPGTLRHAVIQFEPLWIIFSADMTIKLKYELIINSFKTIDGRGANVHITGGGCITIQYVSNVIIHNIHVHHCKPSGNANIRSTPTHVGHRGLSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSYFSHHDEVMLLGHDDRYVQDSGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSAQPTINSQGNRYTAPVDPNAKEVTRRLDAAETEWAGWNWRTDGDILVNGAFFVPSGAGLSTQYGKASSVEPKSVALINQLTMNAGVLGAPRYNAGQGIVYPGFSGGNGGNGDEGYGGNTVINNSPIYENGGGNGNDDYYGMIFKAGGYRVLPILPSINLCTQILLLLYIVTNYSGLFTL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31318746 31329637 - CmPI595203_05g021870.1 Cmu05g2187 417101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2187 551 PANTHER PECTATE LYASE 18-RELATED 65 461 IPR045032 GO:0030570(InterPro)
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 165 190 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 438 461 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 201 217 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 265 286 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 367 386 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 141 158 IPR018082 -
Cmu05g2187 551 PRINTS Pollen allergen Amb family signature 409 433 IPR018082 -
Cmu05g2187 551 SMART amb_all 193 390 IPR002022 -
Cmu05g2187 551 Pfam Pectate lyase 201 382 IPR002022 -
Cmu05g2187 551 SUPERFAMILY Pectin lyase-like 109 438 IPR011050 -
Cmu05g2187 551 Gene3D - 118 460 IPR012334 -
Cmu05g2187 551 FunFam Pectate lyase 118 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0973 Cmu-Chr4:24179898 Cmu05g2187 Cmu-Chr5:31318746 5.30E-181 dispersed
Cmu05g0385 Cmu-Chr5:3284639 Cmu05g2187 Cmu-Chr5:31318746 2.60E-153 dispersed
Cmu05g2187 Cmu-Chr5:31318746 Cmu06g0763 Cmu-Chr6:9141077 5.80E-155 dispersed
Cmu04g0891 Cmu-Chr4:23433616 Cmu05g2187 Cmu-Chr5:31318746 2.70E-42 transposed
Cmu05g2187 Cmu-Chr5:31318746 Cmu08g0727 Cmu-Chr8:19623118 2.10E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2187 K01728 - csv:101205739 937.176