Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2202 ATGAACTGTCTTCAAAACCTTTCAACATCATCTTCTCTCCCGTTCCGGAGCTTCAAATGCCGACAGAGACAGCCTGAATTCCAGCTCTGTAACCTGGTGATAAGGAACTTTACCGATCTACATCGACGTTCTATCGTGAAGGCAGTGTCTGGCTCTACATCAAGTGCTGAAATGAGTGGCGCAGAGGTGGATGATGCCGAGGAAAAGGAGGAAAAATCTGAAATATACAGCCATAACATGACAGAAGCTATGGGTGCTGTATTGACGTATAGACATGAGCTGGGAATGAACTACAACTTTATTCATCCAGATTTAATTGTAGGATCATGCCTACAGACTCCAGAGGATGTTGACAAGCTCCGCAGCATTGGAGTAAAAACAGTTTTCTGCTTGCAGCAAGATCCAGATTTGGAATATTTTGGGGTTGACATTGGTGCTATAATAGCATATACAAAGACATTTGATGATATTGAACATTTACGAGCTCAAATAAGGGATTTTGATGCATTTGACCTACGGCTAAGATTACCAGCTGTTGTAAGCAAATTGCATAAAGCCATAAACCGAAACGGTGGAGTGGCTTACATACATTGCACTGCTGGACTTGGAAGGGCTCCTGCTGTTGCGATGGCGTATATGTTCTGGGTTCAAGGCTACAAACTCAATGAGGCTCTAGAATTACTTCTGAGCAAACGCTCATGCTTCCCAAAAATAGATGCTATTAAAAATGCAACAGCCGATATTCTTTTAGGATTTAGAAAGAAGCCTGTCACTTTATCATGGGAAGATGACCAATGCTCAACTGTAGAAGTATCTGGACTTGATATTGGATGGGGCCAGAGGATTCCATTAAAATTCGACGAGGCACGAGGTGCATGGATTCTCAATAGGGAACTGCCGGAAGGACGATATGAATACAAATACATTATCGATGGTATATGGACGTGCAACGAAAACGAGCCCGTCACTCCACCCAACAAAGATGGCCACGTCAACAATTTCATTGAAGTTGTTGAAGATGAGGATCCGGGTAGTGATAGAGCAATTCTTCGGGGAAGGTTAACCGGAGATGAACCAGAACTCACAGCCGAAGAAAGAAGCAAAATAAGAGAATTTCTTGAAGCTTGCCCAGATGAAAATTGA 1143 42.78 MNCLQNLSTSSSLPFRSFKCRQRQPEFQLCNLVIRNFTDLHRRSIVKAVSGSTSSAEMSGAEVDDAEEKEEKSEIYSHNMTEAMGAVLTYRHELGMNYNFIHPDLIVGSCLQTPEDVDKLRSIGVKTVFCLQQDPDLEYFGVDIGAIIAYTKTFDDIEHLRAQIRDFDAFDLRLRLPAVVSKLHKAINRNGGVAYIHCTAGLGRAPAVAMAYMFWVQGYKLNEALELLLSKRSCFPKIDAIKNATADILLGFRKKPVTLSWEDDQCSTVEVSGLDIGWGQRIPLKFDEARGAWILNRELPEGRYEYKYIIDGIWTCNENEPVTPPNKDGHVNNFIEVVEDEDPGSDRAILRGRLTGDEPELTAEERSKIREFLEACPDEN 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31480637 31487315 - CmPI595203_05g022020.1 Cmu05g2202 417116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2202 380 CDD DSP_laforin-like 96 243 IPR045204 GO:0019203(InterPro)
Cmu05g2202 380 Gene3D Protein tyrosine phosphatase superfamily 90 372 IPR029021 -
Cmu05g2202 380 Gene3D Immunoglobulins 252 344 IPR013783 -
Cmu05g2202 380 ProSiteProfiles Dual specificity protein phosphatase domain profile. 97 254 IPR020422 GO:0006470(InterPro)
Cmu05g2202 380 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 238 IPR029021 -
Cmu05g2202 380 CDD E_set_AMPKbeta_like_N 256 337 - -
Cmu05g2202 380 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 174 232 IPR000387 GO:0016311(InterPro)
Cmu05g2202 380 SUPERFAMILY E set domains 255 337 IPR014756 -
Cmu05g2202 380 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 252 342 - -
Cmu05g2202 380 Pfam Dual specificity phosphatase, catalytic domain 153 235 IPR000340 GO:0016311(InterPro)
Cmu05g2202 380 SMART dsp_5 97 243 IPR020422 GO:0006470(InterPro)
Cmu05g2202 380 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 379 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cmu05g2202 380 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 90 271 - -
Cmu05g2202 380 Pfam Glycogen recognition site of AMP-activated protein kinase 256 340 IPR032640 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2202 Cmu-Chr5:31480637 Cmu07g0539 Cmu-Chr7:6336910 1.20E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2202 - - - 0.0