Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2204 ATGTTGGCAATGGAGAAGGATTTTGATGCCAAGTTGATGATTCAAAGCAACGCTTCTAATGGCGGCAATGTTCAGAGATCCAAGAGCTTTGCCTTTCGAGCTCCTCAGGAGAATTTTACAATCCAGGATTTTGAATTGGGAAAGATTTATGGGGTTGGTTCATATTCCAAGGTTGTGAGGGCGAAGAAGAAGGACACAGGAATTGTATATGCATTGAAGATAATGGACAAAAAATTCATCACCAAAGAAAATAAAACTGCTTATGTGAAGTTGGAAAGAATTGTACTTGATCAGTTGGACCATCCTGGTGTTGTCAGACTATTTTTTACCTTTCAGGATACTTTTTCTTTGTACATGGCATTGGAGTCTTGTGAAGGTGGAGAACTTTTTGATCAGATAACTAGGAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTTTATACTGCAGAAGTGGTCGATGCCCTCGAATACATACACAACATGGGATTGATACACCGTGATATCAAGCCTGAAAACTTGCTACTTACTTCTGATGGACATATCAAAATAGCTGATTTTGGGAGTGTAAAGCCTATGGTTGATAGTCGAATTACCGTTCTCCCGAATGCAGCATCAGATGATAAAGCATGTACATTTGTGGGAACTGCTGCATATGTTCCTCCAGAAGTCCTTAATTCCTCCCCTGCAACTTTCGGAAATGACCTTTGGGCGCTCGGGTGCACCTTGTACCAGATGCTTTCAGGGACTTCTCCTTTTAAGGATGCAAGTGAGTGGCTTATTTTCCAAAAAATTGTAGCACGAGATATAAAATTCCCCAGCTATTTTTCTGAGCAAGCAAGGGACCTCATCGACCACCTATTGGATTTAGATCCCATCAAGAGACCGGGTGCCGGAGCAGAGGGTTATACTTCTCTCAAGAATCATCCCTTCTTTGAGGGGGTTGATTGGAACAACATAAGAGCACAAACTCCTCCCAGGCTTGCTTTAGAAGCAGGGAGTCATTCGAATGAGAACGATGATGGCTCTGAGTCCTCTTGGAATCCTTCACATGTTGGAGACGGTGCATCGAGACAAAATGATGGGAATGCTGGTTCTGCATCAACTTCTGAAGGCTCACATCATATTACTCGACTTGCATCGATTGACTCCTTTGATTCAAAGTGGCAACAATTCCTTGAGCCTGGAGAATCTGTTCTTATGATCTCAATGGTGAAAAAACTTCAGAAGCTAACAAGCAAAAAAGTTCAACTCATCCTCACCAACAAACCAAAGTTGATTTATGTTGATCCTTCAAAGCTCATTGTCAAGGGGAATATTATTTGGTCTGACAATCCTAATGACCTCAACATTCAAGTGACTAGTCCTTCACATTTCAAGATTTGCACACCAAAGAAGATTGCTTCTTTTGAGGATGCGAAACAGCGAGCATGGCAGTGGAAGAAGGCGATCGAGGGGCTTCAGAATCGGTGA 1470 42.38 MLAMEKDFDAKLMIQSNASNGGNVQRSKSFAFRAPQENFTIQDFELGKIYGVGSYSKVVRAKKKDTGIVYALKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTFSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHNMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMVDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQKIVARDIKFPSYFSEQARDLIDHLLDLDPIKRPGAGAEGYTSLKNHPFFEGVDWNNIRAQTPPRLALEAGSHSNENDDGSESSWNPSHVGDGASRQNDGNAGSASTSEGSHHITRLASIDSFDSKWQQFLEPGESVLMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLIVKGNIIWSDNPNDLNIQVTSPSHFKICTPKKIASFEDAKQRAWQWKKAIEGLQNR 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 31524223 31529236 + CmPI595203_05g022040.1 Cmu05g2204 417118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2204 489 Pfam PH domain 386 488 IPR033931 -
Cmu05g2204 489 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Cmu05g2204 489 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2204 489 MobiDBLite consensus disorder prediction 330 372 - -
Cmu05g2204 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 128 326 - -
Cmu05g2204 489 SMART serkin_6 44 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2204 489 MobiDBLite consensus disorder prediction 338 372 - -
Cmu05g2204 489 FunFam 3-phosphoinositide-dependent protein kinase 1 359 489 - -
Cmu05g2204 489 FunFam 3-phosphoinositide-dependent protein kinase 2-like 42 127 - -
Cmu05g2204 489 SUPERFAMILY PH domain-like 305 488 - -
Cmu05g2204 489 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Cmu05g2204 489 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 325 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cmu05g2204 489 CDD STKc_PDK1 42 311 IPR039046 GO:0004674(InterPro)
Cmu05g2204 489 Coils Coil 469 489 - -
Cmu05g2204 489 SUPERFAMILY Protein kinase-like (PK-like) 41 363 IPR011009 -
Cmu05g2204 489 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2204 489 Gene3D - 357 489 IPR011993 -
Cmu05g2204 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2204 Cmu-Chr5:31524223 Cmu06g1710 Cmu-Chr6:28098377 1.40E-54 dispersed
Cmu06g1582 Cmu-Chr6:27018259 Cmu05g2204 Cmu-Chr5:31524223 2.70E-07 dispersed
Cmu05g2204 Cmu-Chr5:31524223 Cmu02g1061 Cmu-Chr2:20577061 2.10E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75560 PF00069 Pkinase 1.30E-65 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2204 K06276 - csv:101212874 941.414