Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2264 ATGAACTCAGTTCCATTCATTTGCCTTCTCCTTCTCTCTCTCCTTCTCGCCGGAGCTTCCGATTCTTCTCCGCCGTCTACCGCCCTCTGTAAATCCACTCTCTACCCTAAGCTCTGCCGCTCCATTCTCTCATCCATCCGGTTCTCCCCCTCCGATCCATACGGCTACGGGAAATTCTCCGTCAAGAAATGTCTCAAACAAGCGATCAAAATGTCGAGCGTAATCAGCGACTATCTCGACCGAGGACGCGATTCGAGGCTGAATCAGCGGGAGGCCGGCGCTCTGAATGACTGCAGAGAACTTTCCGATTTGAATGTGGAGTTTCTTCGGTCGATCCAGGGCGTATTGGAGGCGGCGGAGGGCGTCGATGAGGAACTGGTGGAGCGCGTTGAGAGTATTCTGAGCGCGATCGTGACGAACGGCCAGACTTGTATCGATGGATTGGTGGAATCGAGGAGTAGTTTGGGGAATGCGCTATCGGCGCCGCTGGCGAGCGCCGGAGAGCTGTACAGTGTGTCATTGGGATTGGTTTCGAACTCGCTGTCGCGACGGTGGAAGAAGCGGCGGCAGAAGGGAAATGGAGATGGAGGGAATTTTCCGGCGGGTGCGCGGAGCAGAGAGCCATTGAACACGCTGATCAAGGGACTACATAAAATGGGATCATGCAACAACCAATCCACAAAGTGCTCAGGAAGGAAGCGTTTGTTAACTGATTTAGGCAGCACAGGAATTTTGATCAACAACACTGTGGTTGTTAGCTCAACTGGTGCTGACAACTTCACATCAATTGGAGATGCAATTGCATTTGCTCCCAACAACTCAATGCCTCAAGATGGCTACTTTGTTATCTATGTTAGAGAAGGATACTATGAAGAATACGTAGTCATCCCCAAATTCAAAACCAATGTAATGCTCATCGGAGACGGCATTAATCGAACCATCATCACCGGGAACCATAGCGTCGTCGATGGTTGGACGACTTATAACTCTTCAACCTTCACTGTTTGTGGGGATGGATTTGTTGCAATAGACATGACATTCAGGAACACAGCAGGGCCAGAGAAGCACCAAGCTGTAGCAGTAAGAAACAGTGCAGATCTCTCAACATTCTACCGCTGTAGTTTTGAAGGATATCAAGACACTCTTTATGTTCATTCCCTAAGACAATTCTATAGAGAATGTGACATTTATGGCACTGTAGATTTCATTTTTGGCAATGCAGCTGCAGTTTTCCAGCAATGCAATCTCTATGCCAGAAAGCCACTCCCCAACCAAAAAAATGCCTTCACCGCGCAGGGCCGAACCGATCCGAACCAAAACACAGGCATCTCGATCCACAACTGCAGCATCAAGGCTGCACCCGACTGGGCGATGGATTGGAATGCGACGACGATGACGACGAACTACCTCGGGCGACCGTGGAAACAGTACTCAAGGACAGTGTATATGCAGTCTTATATTGGGAATTTGATAAGCCCAGTGGGATGGTTGGAATGGAATGGAACAGTAGGATTAGAGACATTGTATTATGGGGAGTTTGAGAATTATGGACCAGGAGCTAACACAAGCTTGAGGGTGAATTGGCCTGGATATAGCTTGATGAATCTTACACAAGCTATGAATTTTACTGTCTATAATTTCACTATGGGAGATACTTGGCTGCCTTATACTGATATACCTTTCTCTGGAGGTTTGTTAATTATGTGA 1707 48.1 MNSVPFICLLLLSLLLAGASDSSPPSTALCKSTLYPKLCRSILSSIRFSPSDPYGYGKFSVKKCLKQAIKMSSVISDYLDRGRDSRLNQREAGALNDCRELSDLNVEFLRSIQGVLEAAEGVDEELVERVESILSAIVTNGQTCIDGLVESRSSLGNALSAPLASAGELYSVSLGLVSNSLSRRWKKRRQKGNGDGGNFPAGARSREPLNTLIKGLHKMGSCNNQSTKCSGRKRLLTDLGSTGILINNTVVVSSTGADNFTSIGDAIAFAPNNSMPQDGYFVIYVREGYYEEYVVIPKFKTNVMLIGDGINRTIITGNHSVVDGWTTYNSSTFTVCGDGFVAIDMTFRNTAGPEKHQAVAVRNSADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVFQQCNLYARKPLPNQKNAFTAQGRTDPNQNTGISIHNCSIKAAPDWAMDWNATTMTTNYLGRPWKQYSRTVYMQSYIGNLISPVGWLEWNGTVGLETLYYGEFENYGPGANTSLRVNWPGYSLMNLTQAMNFTVYNFTMGDTWLPYTDIPFSGGLLIM 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32037136 32043576 - CmPI595203_05g022640.1 Cmu05g2264 417178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2264 568 CDD PMEI-like_3 28 179 - -
Cmu05g2264 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Cmu05g2264 568 PANTHER PECTINESTERASE 8 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu05g2264 568 Pfam Plant invertase/pectin methylesterase inhibitor 28 174 IPR006501 GO:0004857(InterPro)
Cmu05g2264 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 179 IPR035513 -
Cmu05g2264 568 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Cmu05g2264 568 NCBIfam pectinesterase inhibitor domain 3 152 IPR006501 GO:0004857(InterPro)
Cmu05g2264 568 SUPERFAMILY Pectin lyase-like 245 564 IPR011050 -
Cmu05g2264 568 Gene3D - 244 565 IPR012334 -
Cmu05g2264 568 Pfam Pectinesterase 250 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu05g2264 568 SMART PMEI_2 21 176 IPR006501 GO:0004857(InterPro)
Cmu05g2264 568 FunFam Pectinesterase 244 565 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2264 Cmu-Chr5:32037136 Cmu09g0533 Cmu-Chr9:4885348 4.00E-151 dispersed
Cmu01g0613 Cmu-Chr1:6776884 Cmu05g2264 Cmu-Chr5:32037136 4.80E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2264 K01051 - csv:101206112 1029.24