Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2265 ATGAGAATAATCTCTCCGCCTTCTGCCTCTTCTTCTTCTTCTTCATCCTCTTCTTCCTCTTCCTCCTGCGTCGGCTCCGATTCCGGCATTCATAACAACAATCTCGCCGCCGCTCCTCACCGTCCGCAATCCGAGAAAACCAGAGCCAAACGACGGAGGAAGAATCAAGACGAAACGAAATGCCAGATTCATAATCATAACGCTAATGGAATCAACAACGCCGCTGCCTCTTCCGCTCGCCGGAGCTCCATTTACAGAGGAGTCACTAGGCACCGATGGACCGGCCGGTTCGAAGCTCATCTTTGGGACAAGAGTTCATGGAATAGCATTCAGAACAAAAAAGGAAGGCAAGTATATTTGGGAGCTTACGATAACGAGGAAGCCGCTGCCCGAACATATGACCTTGCTGCCCTTAAATACTGGGGACCCGGAACCACTCTCAATTTCCCGGTAGAGTCGTACACGAATGAAATGGAAGAAATGCGGAAAGTTTCGAAGGAGGAATATTTGGCGTCGTTACGGCGGCGGAGCAGTGGCTTTTCAAGAGGCGTTTCTAAGTACCGCGGCGTGGCCCGCCACCACCACAATGGCCGGTGGGAGGCTCGGATTGGCCGTGTTTTCGGAAGCAAATATCTTTATTTGGGAACTTACAACACACAAGAAGAAGCAGCTGCAGCATATGACATGGCAGCAATTGAGTATAGAGGAGCCAATGCAGTGACCAACTTTGACATTAGCAATTACATTGGAAGATTAGAGAATAAACCATCAGTTCTTCAAGCAGCAGAGCAAGCAGAGGATCCCAATTATTCCCCTGCTTCTTCCGAGGGAGAAGTAGTACAGCAACAGCAACAGGATCAGCAACAACAACAACAAACGACATTCGCAGGCCCGCCCGACCTTCAGTTCTCAATCGAGAACAACCCAGGAATGGCTGTCATGGAAGAACCACCAACACAAGACGATCATGGTCTACATTGGTCCTTTTTAGACACGGGATTATTCGTGCAGGTCCCTGACCTCCCGCTCGAGAAATCAAGCGAATTGGCCGACCTATACTTCAACGAGATCGGGTTCGAGGACGACATTGGATTGATATTCGAAACGAGCTTAGAGAACAAGAACTGTGAGGGAGATGATCATAATAACAATAATAATAATAATAATAATAATAATAATGTTGGGAAGATGGAGGTGAACTGCAGTGAGAAAATCAGATTGTTCTCAACAACTACTTCACCATCTTCTTCATCAATAACCACCTCGGTTTCGTGTGAATTTAGGGTTTGA 1290 47.29 MRIISPPSASSSSSSSSSSSSSCVGSDSGIHNNNLAAAPHRPQSEKTRAKRRRKNQDETKCQIHNHNANGINNAAASSARRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQVYLGAYDNEEAAARTYDLAALKYWGPGTTLNFPVESYTNEMEEMRKVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGSKYLYLGTYNTQEEAAAAYDMAAIEYRGANAVTNFDISNYIGRLENKPSVLQAAEQAEDPNYSPASSEGEVVQQQQQDQQQQQQTTFAGPPDLQFSIENNPGMAVMEEPPTQDDHGLHWSFLDTGLFVQVPDLPLEKSSELADLYFNEIGFEDDIGLIFETSLENKNCEGDDHNNNNNNNNNNNNVGKMEVNCSEKIRLFSTTTSPSSSSITTSVSCEFRV 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32048980 32052946 - CmPI595203_05g022650.1 Cmu05g2265 417179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2265 429 CDD AP2 84 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Cmu05g2265 429 MobiDBLite consensus disorder prediction 1 70 - -
Cmu05g2265 429 Pfam AP2 domain 85 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 Pfam AP2 domain 185 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 PRINTS Ethylene responsive element binding protein signature 226 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 MobiDBLite consensus disorder prediction 262 306 - -
Cmu05g2265 429 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 300 - -
Cmu05g2265 429 MobiDBLite consensus disorder prediction 267 301 - -
Cmu05g2265 429 SMART rav1_2 84 156 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 SMART rav1_2 186 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 ProSiteProfiles AP2/ERF domain profile. 84 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 FunFam AP2-like ethylene-responsive transcription factor 83 152 - -
Cmu05g2265 429 SUPERFAMILY DNA-binding domain 185 246 IPR016177 GO:0003677(InterPro)
Cmu05g2265 429 SUPERFAMILY DNA-binding domain 83 152 IPR016177 GO:0003677(InterPro)
Cmu05g2265 429 CDD AP2 185 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 Gene3D AP2/ERF domain 185 246 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 Gene3D AP2/ERF domain 84 152 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2265 429 MobiDBLite consensus disorder prediction 1 40 - -
Cmu05g2265 429 FunFam AP2-like ethylene-responsive transcription factor 185 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2265 Cmu-Chr5:32048980 Cmu06g1405 Cmu-Chr6:25215087 2.50E-68 dispersed
Cmu06g1325 Cmu-Chr6:24394508 Cmu05g2265 Cmu-Chr5:32048980 5.00E-75 transposed
Cmu09g0330 Cmu-Chr9:3157584 Cmu05g2265 Cmu-Chr5:32048980 7.60E-79 transposed
Cmu10g2244 Cmu-Chr10:28540564 Cmu05g2265 Cmu-Chr5:32048980 1.40E-73 transposed
Cmu10g2325 Cmu-Chr10:29517384 Cmu05g2265 Cmu-Chr5:32048980 1.90E-50 transposed
Cmu05g2265 Cmu-Chr5:32048980 Cmu08g0827 Cmu-Chr8:20574635 8.80E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6257 PF00847 AP2 1.50E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2265 - - - 0.0