Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2311 ATGGCTTCCAGAGAAGGGAGACGCCATCATCATCATCACCATCATCAGAATCTGGTGCCGCTTGCTGCTTTGATCAGTAAAGAGCGAGTTCCCGGGAACCCTTCATCCACTTTCTCTGTATTTGCTATATTTGATGGACACAATGGAAATGCTGCAGCAATTTACACGAGGGAACATTTGTTGAGTCATGTCTTGGGTGCACTTCCCCGTGGCCTCGGGCAGGAGGAGTGGCTTCAAGCTCTACCACGAGCATTGGTTGCTGGATTTGTGAAGACAGACAAGGAGTTTCAGAGCAGAGGTGAAACTTCTGGAACTACAGCTACGTTTGTGATCATTGATGGATGGACGGTGACAGTAGCATCAGTTGGAGATTCCCGTTGCATTTTGGATACTCAAGGTGGTGCTGTCTCTGCTTTAACGGTTGATCATCGGCTTGAAGAGAATGTTGAAGAGAGAGAACGTGTGACTGCAAGCGGTGGGGAAATTGGAAGATTAAGCATCGTTGGTGGTGCTGAGATCGGCCCACTCCGTTGTTGGCCTGGAGGCTTATGCCTTTCTCGATCCATTGGAGATATGGATGTTGGAGAGTTTATAGTTCCAATTCCATTCGTGAAACAAGTAAAGTTATCAAAGGCAGGCGGGAGGCTTATAATTGCTTCTGATGGCATCTGGGATGCTTTATCATCAGATATGGCTGCAAAGTCCTGCCGTGGACTACCGGCAGAGCTTGCTGCTAGGCAAGTTGTGAAGGAAGCCTTAAGAACAAGAGGGTTGAAAGATGATACAACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAGCACAGTCTTCCCCTCTTCCAAAGAAACAAAGCGTACTGAAATCTCTATTATTCAGGAAAAAGTCTCACAGTTCTAATAAGCTATCAAAGAGGCTTTCAGCTATCGGTTTCGTGGAAGAATTATTCGAAGACGGCTCCGCCATGCTGGCAGAAAGGCTTGGAACAGTAGAGTTGAGTGGATCTGGACATGGCACGCCCAGCCTGTTCACTTGTGCTGTATGTCAAGTAGATCTTGCTCCCAGTGAGGGCATCTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCATGGCAAGGGCCTTTCCTTTGTGCCGATTGTCGAAACAAGAAGGACGCCATGGAAGGAAAACGTCCCAGCGGGGATACTTTGGATCTTTATTTGGAGGTTGTTAATCAAGTGGTTGATATTCAAAATCTCATGAACTATTTCCGTCAGTTATTTTGTATTGAAATGATTAAAAGGGAAGAGAATGTGGTTTGTGGCTTTGTTAACCCATCGTATTGGGGCGGTTTTATGGCTGAATTGAAACGATGGGCCAAACATTGA 1377 46.11 MASREGRRHHHHHHHQNLVPLAALISKERVPGNPSSTFSVFAIFDGHNGNAAAIYTREHLLSHVLGALPRGLGQEEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGAVSALTVDHRLEENVEERERVTASGGEIGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPFVKQVKLSKAGGRLIIASDGIWDALSSDMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSAQSSPLPKKQSVLKSLLFRKKSHSSNKLSKRLSAIGFVEELFEDGSAMLAERLGTVELSGSGHGTPSLFTCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGDTLDLYLEVVNQVVDIQNLMNYFRQLFCIEMIKREENVVCGFVNPSYWGGFMAELKRWAKH 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32389715 32396440 + CmPI595203_05g023110.1 Cmu05g2311 417225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2311 458 PANTHER PROTEIN PHOSPHATASE 2 268 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu05g2311 458 Pfam Protein phosphatase 2C 33 254 IPR001932 -
Cmu05g2311 458 SUPERFAMILY PP2C-like 35 269 IPR036457 -
Cmu05g2311 458 SMART PP2C_4 11 267 IPR001932 -
Cmu05g2311 458 Gene3D - 1 276 IPR036457 -
Cmu05g2311 458 ProSiteProfiles PPM-type phosphatase domain profile. 24 269 IPR001932 -
Cmu05g2311 458 FunFam probable protein phosphatase 2C 5 20 274 - -
Cmu05g2311 458 SMART PP2C_SIG_2 14 269 IPR001932 -
Cmu05g2311 458 CDD PP2Cc 31 269 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2339 Cmu-Chr3:32028288 Cmu05g2311 Cmu-Chr5:32389715 2.00E-154 dispersed
Cmu05g2039 Cmu-Chr5:30096919 Cmu05g2311 Cmu-Chr5:32389715 1.70E-130 dispersed
Cmu05g2311 Cmu-Chr5:32389715 Cmu05g0615 Cmu-Chr5:5219014 7.30E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2311 - - - 0.0