Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2316 ATGTTGCAGGCTTCCATTATTCCTATTCAATCGCCGGCTCCGATGTTCCATAACAAAACTACAGGACTCCCAATCCCTCCATCAGTTGTCTTCCCCATCAACCGGCCGTCGACATCTTTACCCCTACGATCACCCTCACTAACGAGAAGCTCTATCTCTTCTTCTTTTGATCTCAAATCCGGCAAAGGGATGGACGGTTTCCTAGATGTTGAGCTCAAAGTTCGTGATTATGAGCTGGATCAATTCGGAGTTGTGAACAATGCTGTTTATGCAAGTTATTGCCAACATGGTCGTCATGAACTACTGGAAAGTATAGGCCTCAGTCCTGACGCAGTTGCTCGCGATGGAGATGCATTAGCTTTATCAGAATTGTCTTTGAAGTTCCTTGCACCACTTAGAACTGGAGACAAATTTGTTGTTAAGGTGAGGATCTCAGGTACATCAGCTGCTCGCTTCTACATTGATCATTTCATTTTCAAGCTTCCAAATATGGAGCCAATCTTGGAGGCAAAGGGTACAGCAGTTTGGCTTAATAAAAGTTATCGTCCGTTTCAAGCAGCTTCCATGAATTCAATGATTCAACTTTCACCTACCAAACCCATATTCCCTTCTTCTTCACCATTTTTGTGCATCAAAACCAAAACCTCTGTTTCTCAAACATTTTCCATTTGTCAGAGTTACAAGATGGATGGGTTCCAAGAATTTGAGCTCAAAGTTCGTGATTATGAGCTGGATCAGTTCGGTGTGGTCAACAATGCTGTTTATGCAGATTATTGCTACCATGGTCGCCACGAACTGCTAGAAAGAATTGGAGTGAGTCGTGATGCAATTACTAGAAGAGGGGATTCCTTAGCGCTATCAGAGTTGTCTTTGAATTTCCTTTCACCACTTAGAAGTGGAGACAGATTTGTTCTTAAGATCAGGGTGTCGGAAATCTCAAGGGCTCGCATCTACATTCAGCACTTAATTTTCAAGCTTCCAAATATGGAGGCTGTATTAGAGGCAAAGGCTACGGCAGTTTGGGTTAATAAAAACAATCGTCCAGTGCGAATCCCAGAAGAGTATTTAGCCAAATTTGCTGAATTTGTTGGGGATGAGATTCATTTCAAAACACAACAACAAAGATGA 1128 42.29 MLQASIIPIQSPAPMFHNKTTGLPIPPSVVFPINRPSTSLPLRSPSLTRSSISSSFDLKSGKGMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESIGLSPDAVARDGDALALSELSLKFLAPLRTGDKFVVKVRISGTSAARFYIDHFIFKLPNMEPILEAKGTAVWLNKSYRPFQAASMNSMIQLSPTKPIFPSSSPFLCIKTKTSVSQTFSICQSYKMDGFQEFELKVRDYELDQFGVVNNAVYADYCYHGRHELLERIGVSRDAITRRGDSLALSELSLNFLSPLRSGDRFVLKIRVSEISRARIYIQHLIFKLPNMEAVLEAKATAVWVNKNNRPVRIPEEYLAKFAEFVGDEIHFKTQQQR 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32436703 32441204 + CmPI595203_05g023160.1 Cmu05g2316 417230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2316 375 FunFam acyl-acyl carrier protein thioesterase ATL3, chloroplastic 58 195 - -
Cmu05g2316 375 PANTHER 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER 26 183 IPR050563 GO:0009507(PANTHER)|GO:0016297(PANTHER)
Cmu05g2316 375 Gene3D Hotdog Thioesterase 54 192 - -
Cmu05g2316 375 Gene3D Hotdog Thioesterase 218 364 - -
Cmu05g2316 375 Pfam Thioesterase-like superfamily 239 359 - -
Cmu05g2316 375 Pfam Thioesterase-like superfamily 74 190 - -
Cmu05g2316 375 CDD 4HBT 70 178 - -
Cmu05g2316 375 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 64 183 IPR029069 -
Cmu05g2316 375 CDD 4HBT 234 343 - -
Cmu05g2316 375 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 229 363 IPR029069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2316 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g325 . . . . . . . . . Cmo18g01019 . Cma18g01010 . Car18g00931 . Cpe09g00313 . Bhi07g01306 . . Lac13g0512 Hepe01g1177 . . Cla05g02287 Cam05g2460 Cec05g2480 . Clacu05g2455 Cmu05g2316 Cre05g2434 Cone13ag0822 Cone19ag0828 . . Lsi04g00242 . . Cme10g00245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002243 1 4 1 1 1 2 4 1 1 1 2 2 2 3 2 2 2 1 3 2 1 2 3 5 5 1 2 2 1 2 62