Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2328 ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA 615 54.15 MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32521317 32522904 + CmPI595203_05g023280.1 Cmu05g2328 417242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2328 204 MobiDBLite consensus disorder prediction 151 186 - -
Cmu05g2328 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 162 - GO:0010468(PANTHER)
Cmu05g2328 204 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cmu05g2328 204 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1264 Cmu-Chr5:13840253 Cmu05g2328 Cmu-Chr5:32521317 1.40E-52 dispersed
Cmu05g2111 Cmu-Chr5:30632392 Cmu05g2328 Cmu-Chr5:32521317 9.00E-37 dispersed
Cmu05g2328 Cmu-Chr5:32521317 Cmu06g1539 Cmu-Chr6:26649842 9.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6260 PF03195 LOB 5.90E-23 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2328 - - - 0.0