Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2328 | ATGAGAATGAGTTGCAATGGGTGTCGGATTCTTCGTAAAGGATGTAGCGATGACTGTATAATTAGACCTTGTCTTCAATGGATACCCTCCGCCGATTCTCAAGCCAACGCCACCATTTTTCTCGCTAAATTTTACGGCCGCGCCGGCCTCTTCAACCTCATCACCGCCGCCGCCCAACACCTCCGCCCTGCCATTTTCAAGTCGTTGCTGTACGAGGCGTGCGGTCGGATGGTGAATCCCGTGTACGGTTCTGTCGGATTACTCTGCTCCGGCGACTGGGAACGGTGTCAGGCCGCCGTCGACGCTGTGTTGAACGGGTCCATGAACGTCGAACCCGAAGCGCCGCCGTCAAACAACGCCAACCTTTCCCTCAAATGCTGCGACATTCGCCATGTCTGTAACGACCCCAATTTGGCTGCTTCCGGCGAGCTTCTCAAGGTCAAGGCTCGGAGCCGGTTCAAGAAACCCGACCATCGAACCAAACCAAAACCCGAATCGGTTCCTGAATTAGGAATTGGGCCTAGTGTTGAGGAACCGGGTCGGGTTTTGAGAAATGGAAGCCGGTTTGAGAAGGGGGACGTTGAGCTGGAATTGACTCTTAAATCGGCTCAGTAA | 615 | 54.15 | MRMSCNGCRILRKGCSDDCIIRPCLQWIPSADSQANATIFLAKFYGRAGLFNLITAAAQHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPEAPPSNNANLSLKCCDIRHVCNDPNLAASGELLKVKARSRFKKPDHRTKPKPESVPELGIGPSVEEPGRVLRNGSRFEKGDVELELTLKSAQ | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32521317 | 32522904 | + | CmPI595203_05g023280.1 | Cmu05g2328 | 417242 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2328 | 204 | MobiDBLite | consensus disorder prediction | 151 | 186 | - | - | |
Cmu05g2328 | 204 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 162 | - | GO:0010468(PANTHER) | |
Cmu05g2328 | 204 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Cmu05g2328 | 204 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1264 | Cmu-Chr5:13840253 | Cmu05g2328 | Cmu-Chr5:32521317 | 1.40E-52 | dispersed | |
Cmu05g2111 | Cmu-Chr5:30632392 | Cmu05g2328 | Cmu-Chr5:32521317 | 9.00E-37 | dispersed | |
Cmu05g2328 | Cmu-Chr5:32521317 | Cmu06g1539 | Cmu-Chr6:26649842 | 9.00E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6260 | PF03195 | LOB | 5.90E-23 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2328 | - | - | - | 0.0 |