Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2340 ATGGCTAACGATACTGCTCACCGGAAGCACCGCCGATCTGCTTCCGATGAAGACGATGAGAAATCTTCTAAGCGTCACAAACACCGTCACCATCGCCGCCACCACCGACATCGTCACAGCAGCAATAAGAACGAAGAAGAAAGCTGCCGTGACCAGGAGGATAGTGTTCCTCCTGTTGCTAATCGTAGATCTCGGCCGGAAGATGACGTCGAGGAAGGCGAAATTCTCGAAGAGGAAGAGTCTGGCGTTCGCGAGAACGAGAGCTCGATGAAGGAGGTGGATGTGGAATTTGGGAAATTTGAAGATGATGAAATTTCCGGTAGAATTGACCAGCCCGCTATGGAGTGTCATGAGGTGGATGAATCATCTAAGGGTAACTTAATTGTGAAAGAGGGGGCAGGAAACAGTGCTCAAGATTGGAAGATCTCGAAAGTGGACAGTAAGTTCTATAATTTAGATAAGGAAAAAGGTGGCTATTATGCAAAAAAAGATACAGACAAGGAAAACATGATGCTCTATCAAACTGACTCTGGCTGTAAGCATGGCAACGATGGTAGCTTTTCCACGGGTGAAGTAGCTGGCATTAAATACAATAATCTTGAACGCTGTCGAGAGGGTCACAGTAAAGGGGATTTTGGTCACGAATCTCTGAAGTTAGATGAGAGGCAGCACAAACGAATGTTATCTCCTTCTAAAGGGGGTATTAAGAAAATAAGCAACAATGGCAATGGAAAGGTGGCGACAGATGGAAGCACCTTGGGGAATGGGAAAAGGCCACAGTTAGAAAGGACTGAAGACAAGTCTCAGGATTTTACGCCATCAACATCTCGAGATCGATTCATTGATGCATCAGATTGTAGGAGTAGATCGAGGTCAAATTGTCATTCTAGGGGGCAATCTCAGTCTCGTGAAACAGTAGAAGAGGAGGCAGAGTCAAAGAGTAGACATGATCATGGTTGGGATCACCCAATATTTGATGATAAAGGTAAAATTCACACCGACTTGGATGATGATTACACTGAATGTGCTAGGGGAGAGGGAAGGCATCGAAGCAGGGATACGAAGGACAGAGGGAGAAGTAAGATGGAGGTGGATAGGGACTGGTCCAAGGAAAATGAAATGGGAAAAAACAAAGATAAAGATAGGGGGATAGATAAGCAAAAGTATGATGACAGAGAGAGAGGTAGGAGTAAAGATAGAAGAAAGGAGATGGAACGAAACAGGAGCAGGGAGAGAGAGACGGATAGGGATAGGAGAAGGGAAAGGGATGCGGAAAGAGATAGGAGAGTGAAGGAAAGAGGTAGGAGTAGGGAAAGAGAGGTGCAAAGAGATAGAAGAGTGGAGAGGGAAAGAGGTTGGAGTAGGGAGAGAGAGGTAGAAAGGGATAGAAGAATGGAGAAGGAGAGAGGTTGGAGCAAGGAAAGAGAGGTGGACAGGGATAGAAGAGCAGAAAAGGAAAGATGTAGGAGCACTGATAGAGAGGGTAATAGGGATAGAAGAAGAGAAAGGGAAAAAGATAGGAGGAAGGAAAAGGAAGTAGATTGGGATGGGAGAAGGGATAGGGACAGTGATCGGAATGATGATAAGGCTGAATATAGTGATAGAAATAGAGACAAGGAAAGGGTGAGAGAGATGCAAAAGGACCGGTATAGGGACAAAGAATTTGATAGGGAGAGACAAGATGATAGAAACAAGAATAAATCCAGTGACATTTTAACTAGTAAGGACAAGTATGGGAATCTTGAACATGGCTATGTTAAAGGTTCTAAGCAGTCTAGGCATTATGATAATGAATTTGGTCTGGATGGGGGAAGAACTAATGCTGTCGAAAAGCAGGGTAGTTTTAAGAGAAATAATCGTGAAGAAGGTGAAGACAAGCTAATGAGTGATCACGATGGGGAGGAAGAGGATGGAGACAGCATGTCATTTCAATTAGCCGATGAAGAAGAGGAGGATCTTAACAGAATCAAGGAGGAGAGTAGAAGACGGAGGCAAGCAATCTTAGAAAAATACAAATGCCAGCAGTTAGAGAAACAAGTAGAGCCTTCTTTGAAGGAATCTGAGAAAGGTAAGGATTCTGCAAATGATTCTTCTCAATCAGAAGCTGCTGCTCATGTTATTCCAGAATTGGTTGATGGGGCGGTGGATGATAGTGTTACTGACTCATCTTTTGCTGTGGAGAAATCCCCACAACAAAATGGAGTAAATGCGACGGATAAAACTGCTGGTACTAAAGGACTTGGAGAGGGTACTCCAAAGGCTGAGGGGTCAGACGGATTATTCTGTGATGACATTTTTGGAGAAACACCTGCTGCAGTTCGTAAAATGGGCAAAGGTGACGGTTTGCAGATAGAGAGGAGTGGTCTTCATGACAATTGGGACGATGCGGATGGATATTATAACTACCGATTTGGTGAAGTGCTTGATGGTCGGTATGAAATTGCTGCTGCACATGGCAAAGGTGTTTTTTCAACCGTAGTCCGTGCAAAGGATCTCAAAGCTGGTCATGGTGAACCAGAAGAAGTGGCAATCAAAATTTTGCGTAGTAATGAAACAATGTACAAGGCTGGTCTGGAGGAGTTGGTCATATTGAAAAAGCTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCAAGTTTCAAATATAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTCTTGAAGAAATTTGGGCGCAATATTGGCCTTAAGCTAACTGCTGTGAGGGCATACGCTAAGCAGCTTTTTATTGCCCTGAAGCATTTGAGAAACTGTGGTGTTCTCCACTGTGATATAAAGCCGGATAATATGCTGGTTAATGAGGGAAAAAATGTGCTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAATCACCCCATACCTTGTTAGCCGGTTTTATCGTGCACCTGAAATAATTTTAGGGCTGTCATATGACCATCCAATGGATATCTGGTCTGTGGGTTGCTGTTTGTACGAGCTCTCTACAGGAAAAGTTCTTTTTCCAGGTCCTTCTAATAATGACATGCTGCGCCTACACATGGAATTAAAGGGACCTTTTCCGAAGAAGATGCTTCGTAAGGGAGCATTTACTGACCAACATTTTGACCAGGACCTGAACTTCCATGCATCTGAGGAGGATCCTGTAACCAAAAAGACCATAAAGCGAATAATAGTCAATATAAAGCCTAAAGATATTGGATCAATTATTAGGGGATCTCCTGGTGAAGATCCAAAGATGTTAGCCAATTTTAAGGATCTTCTAGACAAAATTTTTGTGTTGGATCCAGAAAAAAGGATGACAGTATCACAGGCATTGAATCATCCATTCATCACTGGCAATCTTCTTTATGATGACCTAAGCTTCTGGCACAATTATGGGATGATTGAATTCAGAAGGGGTCATATTGGTCAGGAGTGGCGGGTTCTTTCAGTCGAATGTACTGTTTCTATTGATGTCTGCTTCTGCTCTGAGAGAACCTTCCAGTGCTTAAGTGATTTAGAGGCACTCAGGAGAAGTCGTTTATGGAGGCACTTGCATTGGAGAGGTTAA 3600 43.19 MANDTAHRKHRRSASDEDDEKSSKRHKHRHHRRHHRHRHSSNKNEEESCRDQEDSVPPVANRRSRPEDDVEEGEILEEEESGVRENESSMKEVDVEFGKFEDDEISGRIDQPAMECHEVDESSKGNLIVKEGAGNSAQDWKISKVDSKFYNLDKEKGGYYAKKDTDKENMMLYQTDSGCKHGNDGSFSTGEVAGIKYNNLERCREGHSKGDFGHESLKLDERQHKRMLSPSKGGIKKISNNGNGKVATDGSTLGNGKRPQLERTEDKSQDFTPSTSRDRFIDASDCRSRSRSNCHSRGQSQSRETVEEEAESKSRHDHGWDHPIFDDKGKIHTDLDDDYTECARGEGRHRSRDTKDRGRSKMEVDRDWSKENEMGKNKDKDRGIDKQKYDDRERGRSKDRRKEMERNRSRERETDRDRRRERDAERDRRVKERGRSREREVQRDRRVERERGWSREREVERDRRMEKERGWSKEREVDRDRRAEKERCRSTDREGNRDRRREREKDRRKEKEVDWDGRRDRDSDRNDDKAEYSDRNRDKERVREMQKDRYRDKEFDRERQDDRNKNKSSDILTSKDKYGNLEHGYVKGSKQSRHYDNEFGLDGGRTNAVEKQGSFKRNNREEGEDKLMSDHDGEEEDGDSMSFQLADEEEEDLNRIKEESRRRRQAILEKYKCQQLEKQVEPSLKESEKGKDSANDSSQSEAAAHVIPELVDGAVDDSVTDSSFAVEKSPQQNGVNATDKTAGTKGLGEGTPKAEGSDGLFCDDIFGETPAAVRKMGKGDGLQIERSGLHDNWDDADGYYNYRFGEVLDGRYEIAAAHGKGVFSTVVRAKDLKAGHGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELSTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFTDQHFDQDLNFHASEEDPVTKKTIKRIIVNIKPKDIGSIIRGSPGEDPKMLANFKDLLDKIFVLDPEKRMTVSQALNHPFITGNLLYDDLSFWHNYGMIEFRRGHIGQEWRVLSVECTVSIDVCFCSERTFQCLSDLEALRRSRLWRHLHWRG 1199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32639373 32650764 + CmPI595203_05g023400.1 Cmu05g2340 417254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 82 122 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 1 122 - -
Cmu05g2340 1199 PANTHER DUAL SPECIFICITY PROTEIN KINASE 391 1130 IPR050494 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 234 258 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 40 70 - -
Cmu05g2340 1199 Gene3D Transferase(Phosphotransferase) domain 1 872 1128 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 1 24 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 25 39 - -
Cmu05g2340 1199 Gene3D Phosphorylase Kinase; domain 1 782 871 - -
Cmu05g2340 1199 FunFam Serine/threonine-protein kinase PRP4 homolog 872 1128 - -
Cmu05g2340 1199 CDD STKc_PRP4 811 1127 IPR044092 GO:0004674(InterPro)|GO:0006468(InterPro)|GO:0045292(InterPro)
Cmu05g2340 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 939 951 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2340 1199 FunFam serine/threonine-protein kinase PRP4 homolog 782 871 - -
Cmu05g2340 1199 SMART serkin_6 812 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 628 647 - -
Cmu05g2340 1199 Coils Coil 646 666 - -
Cmu05g2340 1199 Pfam Protein kinase domain 816 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 648 695 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 204 702 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 301 600 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 204 228 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 725 755 - -
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 725 740 - -
Cmu05g2340 1199 SUPERFAMILY Protein kinase-like (PK-like) 799 1137 IPR011009 -
Cmu05g2340 1199 ProSiteProfiles Protein kinase domain profile. 812 1127 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2340 1199 MobiDBLite consensus disorder prediction 259 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2340 K08827 - - csv:101220260 1845.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2340 Cmu-Chr5:32639373 Cmu11g0620 Cmu-Chr11:6772232 7.00E-44 dispersed
Cmu01g0524 Cmu-Chr1:5492085 Cmu05g2340 Cmu-Chr5:32639373 2.10E-37 wgd
Cmu03g1410 Cmu-Chr3:9349319 Cmu05g2340 Cmu-Chr5:32639373 7.30E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75565 PF00069 Pkinase 2.50E-46 CL0016 Cmu PK