Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2357 ATGGATTTCCTTCATAATTTTCTGGATATTCGAGTAGGAATGGATTTGAGGCACTATGCTGATGCTTTGGATCAAGAACGCCGCAAAATTCAGGTCTTCCAGCGAGAACTTCCCCTCTGTTTGGAGCTTGTCACCAGAGCTATTGAATCTTGCCGGCAACAGTTATCTGGAGTGTCGACAGACAGCTCTGAACATACTTCAAGCGATGGCCCTGTTTTGGAGGAATTTATTCCGATTAACAAACCTTCTGTGAATTCCCATTTTGAAATTGAAGAAGATGAACAATCAAAACCAGAGAAAATTGAATTGGGTCGATCGGATTGGCTTAAATCGGCTCAGCTTTGGAATCAGTCACCGGATCCTCCCGTTACAGAGGATGTTGCTAAGGAAACGACGTCATCGGTTGTTGAGGTCAAAAAGAATGTCGGTGGCGGTGCTTTTCAACCATTTCAGAAGGAGAAAACAACTCCATTGAAAACAGAGTCAGTGGTCGTCGGTAAATCGGACGGTTCTTCGCCAATTCCGGAGGCGACAACGAGTTCGACGGCGGAAACCGCCTCCAAAGGTGGCGGTGGAACCAGTAAACGAGAAGATAAAGAGTCCCAGACTCAAAGAAAACAGAGGCGGTGCTGGTCGTCGGAGTTACACCGGCGATTCGTTCACGCCCTTCAACAACTTGGCGGTCCTCACGTTGCTACACCAAAACAAATCCGAGAGTTAATGAAGGTCGATGGACTCACTAACGACGAAGTCAAAAGCCATTTACAGAAATACCGATTGCACGCAAGAAGGCCAACAAATTCTGCAATGCAAGACAGCGGCAGCTCATCGGCGCCGCAGCAATTCGTGGTGGTCGGAAGCATATGGGTGCCGCCACCGCCTCCACCGAAATACACGGTGGCGACGGCAGCGAAAGCGAGAAATGGGATTTATGCTCCGGTGGCGACGGCGGTGCGACGGCAGACGACGGCAGAGGAAGGGAAGGCGAGCCACAGCGGGGGAGTGGTTCATTCGAATTCGCCGGCGACGTCTTCCTGCACCCACACCACCACAACCTCGCCGTCGGCGGCGTAG 1074 51.02 MDFLHNFLDIRVGMDLRHYADALDQERRKIQVFQRELPLCLELVTRAIESCRQQLSGVSTDSSEHTSSDGPVLEEFIPINKPSVNSHFEIEEDEQSKPEKIELGRSDWLKSAQLWNQSPDPPVTEDVAKETTSSVVEVKKNVGGGAFQPFQKEKTTPLKTESVVVGKSDGSSPIPEATTSSTAETASKGGGGTSKREDKESQTQRKQRRCWSSELHRRFVHALQQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHARRPTNSAMQDSGSSSAPQQFVVVGSIWVPPPPPPKYTVATAAKARNGIYAPVATAVRRQTTAEEGKASHSGGVVHSNSPATSSCTHTTTTSPSAA 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32775414 32776866 - CmPI595203_05g023570.1 Cmu05g2357 417271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2357 357 Gene3D - 205 262 - -
Cmu05g2357 357 MobiDBLite consensus disorder prediction 321 357 - -
Cmu05g2357 357 MobiDBLite consensus disorder prediction 191 211 - -
Cmu05g2357 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 263 IPR017930 -
Cmu05g2357 357 MobiDBLite consensus disorder prediction 159 211 - -
Cmu05g2357 357 FunFam Myb family transcription factor 205 263 - -
Cmu05g2357 357 MobiDBLite consensus disorder prediction 159 189 - -
Cmu05g2357 357 MobiDBLite consensus disorder prediction 333 357 - -
Cmu05g2357 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 261 IPR006447 GO:0003677(InterPro)
Cmu05g2357 357 Coils Coil 16 36 - -
Cmu05g2357 357 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Cmu05g2357 357 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cmu05g2357 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 326 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2357 Cmu-Chr5:32775414 Cmu11g0258 Cmu-Chr11:3136476 1.30E-46 dispersed
Cmu05g2357 Cmu-Chr5:32775414 Cmu08g0469 Cmu-Chr8:15637171 8.90E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6263 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2357 - - - 0.0