Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2358 | ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAGTCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCGGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGATCGGAAACGAAACCGATCGTTACCCGGGTTAGATACGGACCCGGAAACCTCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATCGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTGCAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA | 1047 | 50.91 | MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRNRSLPGLDTDPETSRELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTATGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 32784659 | 32785705 | - | CmPI595203_05g023580.1 | Cmu05g2358 | 417272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2358 | 348 | SUPERFAMILY | DNA-binding pseudobarrel domain | 183 | 279 | IPR015300 | - | |
Cmu05g2358 | 348 | SMART | rav1_2 | 60 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2358 | 348 | Gene3D | - | 176 | 302 | IPR015300 | - | |
Cmu05g2358 | 348 | ProSiteProfiles | AP2/ERF domain profile. | 60 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2358 | 348 | FunFam | AP2 domain-containing protein RAP2.8 | 59 | 116 | - | - | |
Cmu05g2358 | 348 | Pfam | AP2 domain | 59 | 107 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2358 | 348 | Gene3D | AP2/ERF domain | 59 | 116 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2358 | 348 | CDD | AP2 | 59 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu05g2358 | 348 | SUPERFAMILY | DNA-binding domain | 59 | 115 | IPR016177 | GO:0003677(InterPro) | |
Cmu05g2358 | 348 | Pfam | B3 DNA binding domain | 187 | 288 | IPR003340 | GO:0003677(InterPro) | |
Cmu05g2358 | 348 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
Cmu05g2358 | 348 | ProSiteProfiles | B3 DNA-binding domain profile. | 187 | 292 | IPR003340 | GO:0003677(InterPro) | |
Cmu05g2358 | 348 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 59 | 314 | IPR044800 | GO:0003700(InterPro) | |
Cmu05g2358 | 348 | CDD | B3_DNA | 186 | 274 | IPR003340 | GO:0003677(InterPro) | |
Cmu05g2358 | 348 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cmu05g2358 | 348 | SMART | B3_2 | 187 | 292 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0125 | Cmu-Chr1:1137977 | Cmu05g2358 | Cmu-Chr5:32784659 | 5.30E-40 | dispersed | |
Cmu05g2358 | Cmu-Chr5:32784659 | Cmu06g0229 | Cmu-Chr6:2517799 | 5.10E-40 | dispersed | |
Cmu03g1564 | Cmu-Chr3:15337986 | Cmu05g2358 | Cmu-Chr5:32784659 | 1.50E-102 | transposed | |
Cmu03g1980 | Cmu-Chr3:27778749 | Cmu05g2358 | Cmu-Chr5:32784659 | 2.70E-44 | transposed | |
Cmu06g1286 | Cmu-Chr6:24025250 | Cmu05g2358 | Cmu-Chr5:32784659 | 1.80E-45 | transposed | |
Cmu03g1394 | Cmu-Chr3:9214258 | Cmu05g2358 | Cmu-Chr5:32784659 | 1.90E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6264 | PF02362 | B3 | 1.20E-27 | CL0405 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2358 | K09287 | - | csv:101203784 | 623.624 |