Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2358 ATGGACGGTATTTGCATTGACGAAAGCACTTCCACTGAGTCTCAATCCCCGGTGGTTAAATCTCCGCCGCCGGAGACCAGTCTCTGCCGCGTCGGAAGTGGCGTCACCAGTGTAGTTCTCGATTCCGACTCCAGCGGCGGCGGAGTTGAAGCAGAGTCCCGGAAACTACCATCGTCTCGTTACAAAGGAGTGGTCCCACAGCCGAACGGCCGATGGGGGGCCCAGATTTACGAGAAACACCAAAGAGTATGGCTGGGAACGTTCAACGAAGAGGATGAAGCAGCACGTGCCTACGACGTGGCTGCCCAACGTTTCCGTGGCCGTGACGCGGTTACCAATTTCAAACCTTTAGCACACGGCGGTGAAGAAGACGACGCGGTTTCTGCCTTCCTCAACTCCCATTCCAAGGCGGAGATCGTCGACATGCTACGTAAGCATACTTACTTAGACGAACTTCACCAAAGCAAACGAAACGCCGGGTTATCCGGTTGGGATCGGAAACGAAACCGATCGTTACCCGGGTTAGATACGGACCCGGAAACCTCTCGTGAACTTCTATTCGAAAAAGCCGTTACCCCAAGCGATGTGGGGAAATTGAACCGTTTGGTCATCCCGAAACAACACGCTGAAAAGAATTTCCCTCTCCAAACCGGTTCGACCGCTTCCTCCAAAGGTCTTTTGTTGAACTTCGAAGATGGAGGAGGTAAAGTTTGGCGGTTCAGGTACTCGTATTGGAACAGTAGCCAAAGCTATGTGCTGACCAAAGGATGGAGCCGGTTCGTGAAAGAAAAGAATTTGAAAGCCGGTGACATCGTTAGCTTCCTGAAATCGACCGGACAAGATAAACAGCTTTACATTGAATGGAAGGCACGAAAGACTTCTACTGCAACCGGGTCCGACATGAACCCGGTTCAGACCGTTAGACTGTTTGGAGTTGACATTATCAAAGTGTCGCCACATAGTGGGTGTAGTGAGAAGAGGAGGAGGGAATTGGAATTTCTCGCTTCACAATGTACCAAGAAACAAAGGATTGTGGGAGCAATGTAA 1047 50.91 MDGICIDESTSTESQSPVVKSPPPETSLCRVGSGVTSVVLDSDSSGGGVEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGRDAVTNFKPLAHGGEEDDAVSAFLNSHSKAEIVDMLRKHTYLDELHQSKRNAGLSGWDRKRNRSLPGLDTDPETSRELLFEKAVTPSDVGKLNRLVIPKQHAEKNFPLQTGSTASSKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFLKSTGQDKQLYIEWKARKTSTATGSDMNPVQTVRLFGVDIIKVSPHSGCSEKRRRELEFLASQCTKKQRIVGAM 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32784659 32785705 - CmPI595203_05g023580.1 Cmu05g2358 417272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2358 348 SUPERFAMILY DNA-binding pseudobarrel domain 183 279 IPR015300 -
Cmu05g2358 348 SMART rav1_2 60 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2358 348 Gene3D - 176 302 IPR015300 -
Cmu05g2358 348 ProSiteProfiles AP2/ERF domain profile. 60 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2358 348 FunFam AP2 domain-containing protein RAP2.8 59 116 - -
Cmu05g2358 348 Pfam AP2 domain 59 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2358 348 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2358 348 CDD AP2 59 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2358 348 SUPERFAMILY DNA-binding domain 59 115 IPR016177 GO:0003677(InterPro)
Cmu05g2358 348 Pfam B3 DNA binding domain 187 288 IPR003340 GO:0003677(InterPro)
Cmu05g2358 348 MobiDBLite consensus disorder prediction 7 22 - -
Cmu05g2358 348 ProSiteProfiles B3 DNA-binding domain profile. 187 292 IPR003340 GO:0003677(InterPro)
Cmu05g2358 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 59 314 IPR044800 GO:0003700(InterPro)
Cmu05g2358 348 CDD B3_DNA 186 274 IPR003340 GO:0003677(InterPro)
Cmu05g2358 348 MobiDBLite consensus disorder prediction 1 30 - -
Cmu05g2358 348 SMART B3_2 187 292 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0125 Cmu-Chr1:1137977 Cmu05g2358 Cmu-Chr5:32784659 5.30E-40 dispersed
Cmu05g2358 Cmu-Chr5:32784659 Cmu06g0229 Cmu-Chr6:2517799 5.10E-40 dispersed
Cmu03g1564 Cmu-Chr3:15337986 Cmu05g2358 Cmu-Chr5:32784659 1.50E-102 transposed
Cmu03g1980 Cmu-Chr3:27778749 Cmu05g2358 Cmu-Chr5:32784659 2.70E-44 transposed
Cmu06g1286 Cmu-Chr6:24025250 Cmu05g2358 Cmu-Chr5:32784659 1.80E-45 transposed
Cmu03g1394 Cmu-Chr3:9214258 Cmu05g2358 Cmu-Chr5:32784659 1.90E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6264 PF02362 B3 1.20E-27 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2358 K09287 - csv:101203784 623.624