Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2362 ATGTGTGGGGAGGATCAAGAAGAGGATCATCATCAACAACATCAAGGGGAGTGTTCACAAACAATTGAGAATATGTTTCAAGAACAGCTTCTTCTCCACCAACAACAACAGCTACAAAACAACAACAACAACACTGATCATCATATGATGTACGGAGGAGATCATCTTCATCATCATGGAATTGGAAGATCAGGGTTAATTTTTCCACCCGAAATCGTGTCGCCCATGCTGCAACCGTGGTCGTCGCTTAACCCGTTTATGATCCCTCCGCCACCGCCACCGCCGCCATCAACATCATTATCATGTTCATCATCATCCTATGGTAGTTTGTTTACCCGAAGACCACCTAATTGTCTTCAATTTGCTTACGATGGTCCATCTTCGGCGGACCACCTAGGTCGAATCATATCGACCACACTCGGACCGGTGGTTCATCCAGGTTCCACGGCTCCCTTTGGGCTACAAGCTGAACTTGGCAAAATGAGTGCTCAAGAAATAATGGATGCTAAAGCTCTTGCAGCTTCTAAAAGCCATAGTGAAGCTGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCGAAGCTCAGAAGCTTACTCCCTAGTACCACTAAAACAGACAAAGCATCATTGTTAGCAGAAGTAATAGAACACGTGAAAGAGCTAAAACGGCAAACATCATTGATAGCAGAAACAAGTCCAATTCCAACAGAAGTTGATGAGGTAAGTGTAGATGATGCTTCAGAACAAGAGATGATGATGATAAGTAATGGATCAGCCAAATTTGTAATAAAGGCTTCTCTTTGTTGTGAAGACCGTTCTGACCTTCTCCCTGATCTCATTAAAACCCTCAAATCCTTACGTTTAACAACTCTTAAAGCTGAAATCACAACTCTTGGTGGTCGTTTAAGAAATGTGTTGTTTGTCACTGCTGACGAAGAACAACAACAACAAAATATTAGCTCTATTATTCAAGATGCCCTCAAAGCTGTCATTGAAAAAACTGCAGGGGATCATGATTCTTCTTCAGCAAATATCAAAAGACAAAGGACTACCACTACAAATAACATTAATATCCTTTAA 1083 41.55 MCGEDQEEDHHQQHQGECSQTIENMFQEQLLLHQQQQLQNNNNNTDHHMMYGGDHLHHHGIGRSGLIFPPEIVSPMLQPWSSLNPFMIPPPPPPPPSTSLSCSSSSYGSLFTRRPPNCLQFAYDGPSSADHLGRIISTTLGPVVHPGSTAPFGLQAELGKMSAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIEHVKELKRQTSLIAETSPIPTEVDEVSVDDASEQEMMMISNGSAKFVIKASLCCEDRSDLLPDLIKTLKSLRLTTLKAEITTLGGRLRNVLFVTADEEQQQQNISSIIQDALKAVIEKTAGDHDSSSANIKRQRTTTTNNINIL 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32838440 32840930 - CmPI595203_05g023620.1 Cmu05g2362 417276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2362 360 PANTHER TRANSCRIPTION FACTOR BHLH30 148 353 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g2362 360 SMART finulus 179 228 IPR011598 GO:0046983(InterPro)
Cmu05g2362 360 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983(InterPro)
Cmu05g2362 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 228 IPR036638 GO:0046983(InterPro)
Cmu05g2362 360 FunFam transcription factor bHLH30 168 231 - -
Cmu05g2362 360 CDD bHLH_AtAIG1_like 168 245 - -
Cmu05g2362 360 Gene3D - 168 229 IPR036638 GO:0046983(InterPro)
Cmu05g2362 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1785 Cmu-Chr1:31568424 Cmu05g2362 Cmu-Chr5:32838440 1.00E-16 dispersed
Cmu02g1780 Cmu-Chr2:31686501 Cmu05g2362 Cmu-Chr5:32838440 5.60E-31 dispersed
Cmu05g2362 Cmu-Chr5:32838440 Cmu08g1108 Cmu-Chr8:23448421 3.00E-27 dispersed
Cmu06g1028 Cmu-Chr6:17835645 Cmu05g2362 Cmu-Chr5:32838440 9.40E-73 transposed
Cmu10g2127 Cmu-Chr10:27283995 Cmu05g2362 Cmu-Chr5:32838440 2.90E-39 transposed
Cmu11g0613 Cmu-Chr11:6692151 Cmu05g2362 Cmu-Chr5:32838440 1.70E-29 transposed
Cmu03g1371 Cmu-Chr3:8942485 Cmu05g2362 Cmu-Chr5:32838440 3.40E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6266 PF00010 HLH 5.70E-13 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2362 - - - 0.0