Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2367 ATGGCTTCCGAGAGCATTTCCAGATCCAGTTCAGCGGCCGATTCTTATATTGGAAGCTTGATAAGCTTAACTTCCAAGAGTGAGATTAGATACGAAGGTGTTCTTTACAACATCAACACCGAAGAGTCCAGTATCGGACTGAGAAATGTACGGTCATTTGGAACAGAAGGGAGAAAGAAGGATGGACCACAAGTCCCACCAAGTGACAAAGTTTTTGAATACATCTTGTTCCGTGGAAGTGATATCAAGGATCTACAAGTAAAATCTTCTCCTCCTGTTCAGACTACATCCTTGATAAATAATGATCCAGCTATTATTCAGTCTCACTATCCTCGTCCAGCATCGACTTCTTCAAGCTTGCCTCCTCCTGTTAGTGGGCCTTTGCCTGATATTAATTCTCAGGCCATGCCTATGGGAATTCCAGGATCTAATTTCCAGGGTGGGTTGCCTTTATATCATCCTGGAGGAAATGTAGGGTCTTGGGGAGCTTCTCCTACGCCATCTCCCCCAAATCCAAGTGGTGGTGGGCTTGCTTTGCCAATGTACTGGCAAGGGTATTATGGCCCCCCTAATGGACTTCCTCATATGCAACAGCAGTCATTACTTCGTCCACCACCTGGCCTGTCATTGCCTTCTTCCTTGCAGCAGCCCCTGCAATATCCTAATCTTAATGCTTCTTTACCCACTGGGGCACCAAATTTATTAGAAGTTCCATCTTCTTTATTCTCTGCTAATCCTACCACTCCTAGTTTATTGTCCACAGCAATGCCACCAGTAACTGTATCTTCGTCACTCCCATCTGTGCTTTCGGCTCCACAGACCTCTGAGATATCATCAAGCTCAGTGGCCAACAAGACAGTAAATTCTGCTCTTCCTCAAGCTCCTCTAAGTACTAATTTGCCATCGCTCTCTCCTTTGACGGCGAGTTCAGATGTCAGCCCTGTTGTGCCTCCAACTACTAACAAAACTACTACAGTTTCTGGTCCAGCATTGTCTTACCAAACTGTCTCTCAATCTACATCCTCTGTTGTTGGAACATCGAACTCTGCTCTCACAGGTGCACCTGCACCTACCCTTGTGACTCCAGGACAGCTGTTGCAAACTACTGTAGCCTCTTCATCTTTGCAAACAGTTCAAAAGGACGTTGAGGTGGTTCAAACATCTTCCTCCTTAGCAGCCGAACAAACTGTTCCAGCAGCCGATACTCAGCCACCATTATTACCGTTACCAGTGGCTTCACAAGCTATTCATAAGCCAAATGGTTCAACTTCGCAAACTCGGTACATCCACAGGGGACGTGGTAGAGGAAGACGATTTGGGAACTCGCATCAAACAGAAAGATTTACAGAAGATTTTGACTTCACGGCAATGAATGAGAAATTTAACAAGGATGAAGTCTGGGGTCATCTTGGCAAGAATACCAAATCTCATCCAAAGTACAATGATGGGGATGAAAAGTTCAGTGATGAAGATGATGTCTATGAGGAAGATGATGGTGAATCTTCAAAGTTGGAGATCAAGCCTGTGTACAATAAGGACGACTTTTTTGATACTCTCTCGTGCAACAATCCTGACAATGAAGCTCAAAATGGAAGGAGGACCAGATACTACGAACAAATCAAGTTGGACACTGAGACATTTGGTGAATTTGCAAGATTCCGAGGTGGTCGTGGTGGATTTTCTTCTGGACGTGGTGGCCGTCGTGGTGGTTATTACGGGAGAGGATACGGCCATGTTGGAAGGGGTCGAGGGCGGGGAATGCATAACTATAATCCCCTACTTACCACTGTACTCTTGGCCGAGCCAAGATCGTTGAGCTGCAGACCGCCTTTCTCTGTCCCCATGGCCGCGGCATTGCCCTCACTCACCCCATTACTCATCTTTGCCAGAATCTTTGGTCTGCTTGTTGCCGTTCTGGTCTTCGTTTGGGCTTTTGCATTCAGTTCCAGCTTCGGCCATCGCTCCCCTGCCCGCGATGACCATCTCTTCGACGTTCTGCATCCTTTGTTCATGGTAATTGGTCTCATTCTCCTCAGCGGGGAAGCAATTTTGGTCCATAGCTGGTTGCCTGGTTCGAGAAATTTGAGGAAATCTGTTCATCTGAGTCTTCAAGGGCTGGCTTTAGCTTCTGGGATTTCCGGAATTTGGACCAAGTTTCATTGGGATCGTGGCTTTTTGGCTAATTTCCACAGTTTACATTCTTGGATGGGTTTGATTGTTGTCACTTTGTTCGGAGCTCAGTGGATGATGGGGTTTCTGAGCTTCTGGCATTGGAGGGAGGTGAGGGCAACAAGAGAAAGAGTGCTGCCATGGCATGTGTTCCTTGGGTTATACAGTTATGCATTGGCAGTGGTAACAGCAGAAACAGGGCTTCTTGAGAAGTTGACATTGTTGCAAACCAAGAGAAATGTCCCTAGGAAGGGTCCTGAAGCCATGGTTGTAAACAGTCTAGGCTTGGCACTGGCTTTGCTTACTGGAACTGTTATGCTCACTGCTATATCTCCTAAATATCCTCCTTCCCTCCCCACCACCAAACAACAACCATTTTTCTCTAATTCAAAGCCCTTACCTTCTTAA 2577 46.29 MASESISRSSSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLRNVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQTTSLINNDPAIIQSHYPRPASTSSSLPPPVSGPLPDINSQAMPMGIPGSNFQGGLPLYHPGGNVGSWGASPTPSPPNPSGGGLALPMYWQGYYGPPNGLPHMQQQSLLRPPPGLSLPSSLQQPLQYPNLNASLPTGAPNLLEVPSSLFSANPTTPSLLSTAMPPVTVSSSLPSVLSAPQTSEISSSSVANKTVNSALPQAPLSTNLPSLSPLTASSDVSPVVPPTTNKTTTVSGPALSYQTVSQSTSSVVGTSNSALTGAPAPTLVTPGQLLQTTVASSSLQTVQKDVEVVQTSSSLAAEQTVPAADTQPPLLPLPVASQAIHKPNGSTSQTRYIHRGRGRGRRFGNSHQTERFTEDFDFTAMNEKFNKDEVWGHLGKNTKSHPKYNDGDEKFSDEDDVYEEDDGESSKLEIKPVYNKDDFFDTLSCNNPDNEAQNGRRTRYYEQIKLDTETFGEFARFRGGRGGFSSGRGGRRGGYYGRGYGHVGRGRGRGMHNYNPLLTTVLLAEPRSLSCRPPFSVPMAAALPSLTPLLIFARIFGLLVAVLVFVWAFAFSSSFGHRSPARDDHLFDVLHPLFMVIGLILLSGEAILVHSWLPGSRNLRKSVHLSLQGLALASGISGIWTKFHWDRGFLANFHSLHSWMGLIVVTLFGAQWMMGFLSFWHWREVRATRERVLPWHVFLGLYSYALAVVTAETGLLEKLTLLQTKRNVPRKGPEAMVVNSLGLALALLTGTVMLTAISPKYPPSLPTTKQQPFFSNSKPLPS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 32879886 32888229 - CmPI595203_05g023670.1 Cmu05g2367 417281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2367 858 MobiDBLite consensus disorder prediction 468 486 - -
Cmu05g2367 858 SMART 561_7 666 791 IPR006593 -
Cmu05g2367 858 Pfam FDF domain 447 550 IPR019050 -
Cmu05g2367 858 CDD LSm14_N 16 87 IPR025609 -
Cmu05g2367 858 ProSiteProfiles Sm domain profile. 8 91 IPR047575 GO:0003723(InterPro)
Cmu05g2367 858 Pfam Scd6-like Sm domain 16 89 IPR025609 -
Cmu05g2367 858 CDD Cyt_b561_ACYB-1_like 660 799 - -
Cmu05g2367 858 FunFam Cytochrome b reductase 1 619 840 - -
Cmu05g2367 858 PANTHER SCD6 PROTEIN-RELATED 13 586 - GO:0000932(PANTHER)|GO:0003729(PANTHER)|GO:0033962(PANTHER)|GO:0034063(PANTHER)
Cmu05g2367 858 SMART FDF_2 446 551 IPR019050 -
Cmu05g2367 858 MobiDBLite consensus disorder prediction 468 502 - -
Cmu05g2367 858 ProSiteProfiles TFG box profile. 531 551 IPR025768 -
Cmu05g2367 858 FunFam Trailer hitch, isoform C 10 92 - -
Cmu05g2367 858 SUPERFAMILY Sm-like ribonucleoproteins 15 92 IPR010920 -
Cmu05g2367 858 ProSiteProfiles DFDF domain profile. 440 476 IPR025762 -
Cmu05g2367 858 Gene3D - 7 92 - -
Cmu05g2367 858 ProSiteProfiles Cytochrome b561 domain profile. 628 833 IPR006593 -
Cmu05g2367 858 ProSiteProfiles FFD box profile. 508 523 IPR025761 -
Cmu05g2367 858 SMART LSM14_2 10 110 IPR025609 -
Cmu05g2367 858 Pfam Eukaryotic cytochrome b561 666 796 IPR006593 -
Cmu05g2367 858 Gene3D - 616 838 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0651 Cmu-Chr1:7290063 Cmu05g2367 Cmu-Chr5:32879886 4.40E-24 transposed
Cmu07g0690 Cmu-Chr7:13292615 Cmu05g2367 Cmu-Chr5:32879886 6.20E-23 transposed
Cmu09g1275 Cmu-Chr9:15967538 Cmu05g2367 Cmu-Chr5:32879886 6.70E-28 transposed
Cmu11g0538 Cmu-Chr11:5877143 Cmu05g2367 Cmu-Chr5:32879886 1.80E-44 transposed
Cmu01g0551 Cmu-Chr1:5886290 Cmu05g2367 Cmu-Chr5:32879886 2.80E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2367 K18749 - csv:101205721 905.205