Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2378 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCCCTCCATCTCCGCCGCCTCCGGTCGCATCTAATTCCCCACCTAGTACTCCGTCACTGTCGCCGCCGCAACAATCGCCTCCTCCGAATCCGTCTGACTCCGCGACTCCCACTTCATCTCCTCCTCCGCCGTCTCGTCAACCATCTGCTGCTTCACCTCCACCTGCATCTGAAACTCCGCCGCCATCAACACCCGCATTGTCTCCTCCGCCGGCAACTCCACCATCAACTCCGTCCAATGCTCCACCCCCATCAACACCGGACCCTCCACCACCATCAGCAACCCCACCAGTAAGCTCCACTCCACCAACGCCATCTAATTCCCCACCAAATTCATCTCCACCTCCTGCAGCACAGCCTCCTCAATCCCCTCCACAATCATCAAAACCACCTGAAAACCCCCCTCCGCTGCCGCCGCCACCACCACAAGCAAACCCGCCGGATAATCCAGCGCCGCCGCCACAGCCCACAAACCCACCTGGGAATTCACCTCCTACGCCACCATCAGCACTGCCTCCAGCTACCTCACCTCCTTCCCCAGCATCCATACCTCCAAGAAATTCACCTCCACCCCCAAGGCTTACTCCACCTCCCGGTGAGCCCTCACTTTCAAGTCCTCCTCCCAGGTCATCACCGCCCCCATCTCCTCCACCACCGCCGCCGTCACATCTTTCTCCTCCATTACCGTCTAAACCCCCAACATTGCCGTCAGGAAATCGTACGGACGATGGTTCTGGTCCTATTGATGGAGGAGCAAACTCGAAATCCAACAGCAATGGAGGGATCAGTAGTGGGGGTGTGATCGCCATTGGAGTAGTGGCAGGAATTATAGTGCTTTCCATAATTGGGTTTGTTGTTTGGTACATCAGGAGGCCAAGGAAAAATGATTCTGGGCGTGGAGGTTACATTATGCCATCCTCTCTGGGCTCCTCTCCTAAGTCGGAAACATCCCTTATGAAGGTCCATTCCACAGTTCATCAAGACATACATGCCAGTGGCAGTGGCAGTGGCAGTGGCAGTGGTGGAATATACACTCCAAAAGAGCTTGGTGGGTTGGGCAGTTCGAGGCCATTGTTTACATACGAAGAACTCTTCAAAGCAACAGATGCATTTTCTACTCAGAACCTTTTAGGAGAAGGAGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGTGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCTGGAATTCAAAGCTGAAGTTGAGATTATTGGTCGTGTACACCATCGCCATTTGGTTTCTCTTGTGGGCTATTGTATTTCAGAGCATCAAAGGTTGCTGGTCTATGATTATGTCCCTAACAATTCCCTTTACTACCATCTTCATCTCAAAGGGGATGGCGAGCTCGTTCTGGAATGGACAAAGCGCATTAAGATCGCAGCTGGTGCAGCTCGGGGAGTTGCTTATCTTCATGAAGACTGCCACCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCTGACTTTGGGCTTGCTAGATTAGCTCTCGATGAACAAACTCATATAACAACCCGTGTTGTGGGAACTTTTGGATATGTTGCCCCTGAATATGCATCGAGTGGAAAGTTAACTGAGAGGTCAGATGTATATTCTTTTGGAGTTGTACTTCTTGAGCTGATTACTGGTCGAAAGGCTGTGGACGCATCCCAACCAATGGGGAATGAGAGCCTTGTCGAATGGGCTCGGCCTTTACTAAACCATGCACTCGACAGCCAAGATTTCGAAAAATTGGTGGACCCAAGGCTTGAAAGGAACTACGTCGAGAGTGAAATGTTGGGGATGATAGGAATAGCTGCTGCTTGCGTGCGGCACGCGTCTGCCAAGAGACCGCAGATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCCACAGCAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCTTTCGACTCCGGTCAACAATCTGCTGAAATTAGATTTTTCCGAATGCTGGCCTTCGGTAACCAAGATTACAGTTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2154 50.88 MAAVSPAPNSSPSPASPSPPSPPPPVASNSPPSTPSLSPPQQSPPPNPSDSATPTSSPPPPSRQPSAASPPPASETPPPSTPALSPPPATPPSTPSNAPPPSTPDPPPPSATPPVSSTPPTPSNSPPNSSPPPAAQPPQSPPQSSKPPENPPPLPPPPPQANPPDNPAPPPQPTNPPGNSPPTPPSALPPATSPPSPASIPPRNSPPPPRLTPPPGEPSLSSPPPRSSPPPSPPPPPPSHLSPPLPSKPPTLPSGNRTDDGSGPIDGGANSKSNSNGGISSGGVIAIGVVAGIIVLSIIGFVVWYIRRPRKNDSGRGGYIMPSSLGSSPKSETSLMKVHSTVHQDIHASGSGSGSGSGGIYTPKELGGLGSSRPLFTYEELFKATDAFSTQNLLGEGGFGSVYKGYLPDGRVVAVKELKIGGGQGELEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVPNNSLYYHLHLKGDGELVLEWTKRIKIAAGAARGVAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLARLALDEQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGNESLVEWARPLLNHALDSQDFEKLVDPRLERNYVESEMLGMIGIAAACVRHASAKRPQMGQVVRAFDSLATADLSNGMRFGESQAFDSGQQSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33008169 33011880 - CmPI595203_05g023780.1 Cmu05g2378 417292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2378 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2378 717 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524(InterPro)
Cmu05g2378 717 Gene3D Phosphorylase Kinase; domain 1 365 463 - -
Cmu05g2378 717 Gene3D Transferase(Phosphotransferase) domain 1 464 680 - -
Cmu05g2378 717 ProSiteProfiles Protein kinase domain profile. 388 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2378 717 FunFam proline-rich receptor-like protein kinase PERK8 464 677 - -
Cmu05g2378 717 MobiDBLite consensus disorder prediction 1 277 - -
Cmu05g2378 717 MobiDBLite consensus disorder prediction 10 251 - -
Cmu05g2378 717 FunFam Proline-rich receptor-like protein kinase PERK8 361 463 - -
Cmu05g2378 717 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 247 695 IPR047117 -
Cmu05g2378 717 SMART serkin_6 388 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2378 717 Pfam Protein kinase domain 389 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2378 717 CDD TM_EGFR-like 280 312 - -
Cmu05g2378 717 CDD STKc_IRAK 394 666 - -
Cmu05g2378 717 SUPERFAMILY Protein kinase-like (PK-like) 371 661 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0755 Cmu-Chr1:8504239 Cmu05g2378 Cmu-Chr5:33008169 8.40E-62 dispersed
Cmu02g2233 Cmu-Chr2:35924664 Cmu05g2378 Cmu-Chr5:33008169 2.30E-29 dispersed
Cmu05g2378 Cmu-Chr5:33008169 Cmu11g0534 Cmu-Chr11:5829654 2.00E-147 dispersed
Cmu07g1601 Cmu-Chr7:31168454 Cmu05g2378 Cmu-Chr5:33008169 1.10E-59 dispersed
Cmu10g1146 Cmu-Chr10:4075668 Cmu05g2378 Cmu-Chr5:33008169 5.40E-44 dispersed
Cmu11g0448 Cmu-Chr11:4934151 Cmu05g2378 Cmu-Chr5:33008169 1.30E-39 dispersed
Cmu11g1709 Cmu-Chr11:29264261 Cmu05g2378 Cmu-Chr5:33008169 4.30E-64 dispersed
Cmu05g2378 Cmu-Chr5:33008169 Cmu05g2383 Cmu-Chr5:33065048 1.60E-68 proximal
Cmu01g0757 Cmu-Chr1:8538660 Cmu05g2378 Cmu-Chr5:33008169 2.30E-52 transposed
Cmu01g2275 Cmu-Chr1:35047392 Cmu05g2378 Cmu-Chr5:33008169 6.10E-46 transposed
Cmu03g1019 Cmu-Chr3:4758811 Cmu05g2378 Cmu-Chr5:33008169 1.70E-56 transposed
Cmu07g1311 Cmu-Chr7:28396657 Cmu05g2378 Cmu-Chr5:33008169 2.20E-55 transposed
Cmu01g0569 Cmu-Chr1:6121564 Cmu05g2378 Cmu-Chr5:33008169 2.30E-42 wgd
Cmu03g1348 Cmu-Chr3:8601514 Cmu05g2378 Cmu-Chr5:33008169 3.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75566 PF00069 Pkinase 3.40E-43 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2378 - - - 0.0