Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2383 ATGGTTCAAATGGGAATTATTAGAATAAAAGTTTCCATTTTCTTCTTCTTCTTCTTCTTCTTCTTATGGAATTCTTCAGTAAATGGTTTGCTTACTGCAAAAGGTGTCAACTATGAAGTTCAAGCCTTGATGGCCATTAAAGCTGCTTTGAAAGATCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGTTGGAGCATGATTACTTGTTCTTCAGAGAAATTTGTCATTAGCTTAGGAGCTCCAAGTCAGAACTTGTCCGGTAGCCTGTCGCCGAGCATCGGAAATTTGACGAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCTAGCCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCACTTCTCTTTCCCATCTCAAGAGTCTTCAATACTTGAGGCTTAATAACAACAGTCTTTCTGGAGCTATTCCTTCATCTTTGGCCAACATGACTCAGCTGGCATTGTTGGACCTGTCTTTTAATAATCTTAGTGGCCCATTGCCCAGATTGCTAGCTAAAACATACAACCTTGCTGGGAATTCTCTCATTTGCTCACCTGGGTCAGAGCATAGCTGCAATGGAACTGCTCCACCTCTTTTATTTGCAGTCAATACACCTCAAAAGCCACAACCTTCTGGGAGATCCAAGGGCCAAAAATTAGCCTTAGCTTTTGGCTCAAGCCTTGGATGTGTTTTTCTGTTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATTTTCTTTGATGTTAATGACCAAAGATTTGAAGAAGTTTGCCTTGGGAACCTAAGGATCTTCCAGTTCAGAGAGCTTCAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGATTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACGGTTATAGCTGTGAAGAGGTTAAAAGATGGAAATGCAATGAGAGGAGAAATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGGAACCTCCTCCGTCTCTATGGGTTCTGTATGACAACCACAGAGAGACTTTTGGTTTACCCCTATATGTCTAACGGCAGTGTTGCATCCCGTCTCAAAGCAAAGCCAGCTCTGGATTGGAGCACCAGGAAAAGAATAGCATTGGGAGCAGCAAGAGGGTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGGGATGTCAAGGCAGCAAATATATTGCTTGATGATTATTGCGAGGCTGTGGTGGGAGATTTTGGATTGGCAAAGCTGTTGGATCACAGAGATTCGCATGTGACCACTGCTGTACGAGGAACTGTTGGCCATATAGCTCCTGAGTATCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTGTTTGGATATGGAATTCTTCTTCTTGAGTTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCTAATCAGAAAGGAGCCATGCTTGATTGGGTCAAGAAAATTCACCAAGAAAAGAAGCTTGAAATACTAGTCGATAAGGATCTGAGGAACAATTACGACAGGATTGAGCTTGAAGAAATGGTTCAAGTAGCTCTTTTATGCACACAGTATCTTCCAACTACCAGACCTAAGATGTCTGAAGTGGTCAGAATGCTTGAAGGGGATGGACTTGCGGAGAAATGGGAAGCTTCTCAGAGGGCAGATGCAAACAGGTACAGAGTCAATGAATTCTCCTCGTCAGAGCGATACTCTGATCTAACAGATGATTCTTCCCTGCTTGCACAAGCCATGGAGCTTTCTGGACCAAGATGA 1884 43.05 MVQMGIIRIKVSIFFFFFFFFLWNSSVNGLLTAKGVNYEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSSEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPTSLSHLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLLAKTYNLAGNSLICSPGSEHSCNGTAPPLLFAVNTPQKPQPSGRSKGQKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRELQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGYGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDRIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRADANRYRVNEFSSSERYSDLTDDSSLLAQAMELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33065048 33068133 + CmPI595203_05g023830.1 Cmu05g2383 417297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2383 627 SMART serkin_6 307 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2383 627 FunFam Somatic embryogenesis receptor-like kinase 1 384 596 - -
Cmu05g2383 627 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Cmu05g2383 627 FunFam Somatic embryogenesis receptor kinase 1 276 383 - -
Cmu05g2383 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 627 - -
Cmu05g2383 627 Gene3D Transferase(Phosphotransferase) domain 1 384 596 - -
Cmu05g2383 627 ProSiteProfiles Protein kinase domain profile. 307 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2383 627 Pfam Protein tyrosine and serine/threonine kinase 310 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2383 627 Gene3D Phosphorylase Kinase; domain 1 276 383 - -
Cmu05g2383 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2383 627 Gene3D Ribonuclease Inhibitor 36 217 IPR032675 -
Cmu05g2383 627 SUPERFAMILY Protein kinase-like (PK-like) 285 577 IPR011009 -
Cmu05g2383 627 SUPERFAMILY L domain-like 39 200 - -
Cmu05g2383 627 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524(InterPro)
Cmu05g2383 627 FunFam Putative LRR receptor-like serine/threonine-protein kinase 36 217 - -
Cmu05g2383 627 Pfam Leucine Rich Repeat 176 195 IPR001611 GO:0005515(InterPro)
Cmu05g2383 627 Pfam Leucine Rich Repeat 127 149 IPR001611 GO:0005515(InterPro)
Cmu05g2383 627 Pfam Leucine Rich Repeat 103 124 IPR001611 GO:0005515(InterPro)
Cmu05g2383 627 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0713 Cmu-Chr1:7970515 Cmu05g2383 Cmu-Chr5:33065048 4.60E-233 dispersed
Cmu01g2325 Cmu-Chr1:35427622 Cmu05g2383 Cmu-Chr5:33065048 5.70E-152 dispersed
Cmu05g2383 Cmu-Chr5:33065048 Cmu11g0516 Cmu-Chr11:5615607 1.30E-230 dispersed
Cmu05g2378 Cmu-Chr5:33008169 Cmu05g2383 Cmu-Chr5:33065048 1.60E-68 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75567 PF00069 Pkinase 1.10E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2383 - - - 0.0