Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2389 ATGTCCAGTGAGCAAAGTCTATGGTGGAAAAACAGCCAAAGTTCTGCACAAAATAAGAGGGGCACAATAGGACAAGCCATGGTGGAGGGCGCTGCTAGTAGAGGGATTCGAACCACAAACTTTGTGGTGATTAACAACGGTAAGGAATTGTCTGGATCAGAGGTGACGTTTCAGGTGGTGGCTGAACAAACCATGGCGTCTTCTCCGACTCCCATCTCTCCACTATCTTTTCCCAATCCAATACCAAGATCAAGATCAAAACCAAAACCAATACCAAACAAACCGCCGTCTTCATTGCCTCCTGCCTTGAACCCCAACCCCAAATCTCCGCCCAAGGAACTTTACTTCAACCGCGATGGCTCTACCTTTAAAAAACTTCAGGTCGGGGTTAATCTGGTGGCGGATCTGGTGGGTGTTACATTAGGGCCGAAGGGAAGGAATGTGGTACTTCAGAACAAATATGGACCGCCCAAGATAGTCAACGACGGTGAAACTGTCCTGAAAGAGATTGAACTGGAAGACCCTTTAGAGAACGTTGGGGTGAAATTGGTGAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTGATTGCCGAGGGTATGAAGGTTATTTCGTCTGGCATGAATCCTGTTCAAATTGCACGTGGGATTGAGAAGACTGCAAAAGCACTAGTTTCTGAGCTGAAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTGGCCGCAGTTAGCGCAGGGAATGATTATGCTGTAGGAAATTTGATCTCAGATGCCTTACGTCAAGTTGGAAGGAAGGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGACCGTGGATATTTATCTCCATACTTCGTTACTGATAGAAAGAAGATGGTAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCTGTGAAAGAGAAATACCCAATTGTGATATTGGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCCACCTTAACTGGAGCTACTGTGGTTAGAGAAGATAGTGGATTCACGTTAGAAAAGACCGGCAAAGAGGTATTGGGCTCTGCTAGTAAGGTTGTTATATCAAAACATTCCACACTAATAGTTACAGATGGGAATACTCGGGAAGCTGTTCGGAAAAGGGTCTTACAAATTCAAAAGCTTATGGAGAATACTGAGGAAAATTTTCCGAAGAAGATATTGAATGAGAGAATTGCAAGATTATCTGGGCGAATTGCAATACTTCAGGTAGGAGCACAAACTGAAGTTGAGTTGAAGGATAGACAGTTAAGGATTGAGGACGCTTTGAATGCATCAAAGGCTGCTATTGAAGAAGGTGTTGTTGTTGGTGGAGGTTGTTGTCTTTTAAGGCTGTCTACGAAGGTGGATGCTATAAAGAAAGTCCTGGAAAATGACGAACAGATGATTGGAGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATAGCGAGAAATGCCGGTGTCAATGGAAATGTTGTAATAGATAAGGTTCTAATCAACAATGATATGGATTATGGATATAATGCGGCCACAGACCGTTACGAGGATCTAATGAAAGCTGGAATCTTGGACCCTTCAAAGGTTGTTAGATGTTGCCTGGAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAACCAGAACCCATACCAAGAAGAACACCGATGCCAATCTCAGACAAATGGGTCTCTAGCTCCACGGACAAGATCAGAGTATGTGGAGAGTATTCTCAAGTTGAAGGGATTCAATGGGAGTACTGTTTTAAGACAGCTGCACGGTACTTTAGTCACCAGACAAATGGGTCTCGTCTCTGGAGCCACCATTCAATGGGCATGTAG 2115 43.78 MSSEQSLWWKNSQSSAQNKRGTIGQAMVEGAASRGIRTTNFVVINNGKELSGSEVTFQVVAEQTMASSPTPISPLSFPNPIPRSRSKPKPIPNKPPSSLPPALNPNPKSPPKELYFNRDGSTFKKLQVGVNLVADLVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMNPVQIARGIEKTAKALVSELKLMSREVEDHEIAHVAAVSAGNDYAVGNLISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDRGYLSPYFVTDRKKMVVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGIEQEALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVVREDSGFTLEKTGKEVLGSASKVVISKHSTLIVTDGNTREAVRKRVLQIQKLMENTEENFPKKILNERIARLSGRIAILQVGAQTEVELKDRQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKKVLENDEQMIGAEIFKRALSYPTKLIARNAGVNGNVVIDKVLINNDMDYGYNAATDRYEDLMKAGILDPSKVVRCCLEHAASVAKTFLTSDAVVVDMKEPEPIPRRTPMPISDKWVSSSTDKIRVCGEYSQVEGIQWEYCFKTAARYFSHQTNGSRLWSHHSMGM 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33110657 33118071 + CmPI595203_05g023890.1 Cmu05g2389 417303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2389 704 Coils Coil 448 468 - -
Cmu05g2389 704 MobiDBLite consensus disorder prediction 1 21 - -
Cmu05g2389 704 SUPERFAMILY GroEL apical domain-like 294 485 IPR027409 -
Cmu05g2389 704 ProSitePatterns Chaperonins cpn60 signature. 514 525 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Cmu05g2389 704 Gene3D - 247 519 IPR027410 -
Cmu05g2389 704 PRINTS 60kDa chaperonin signature 377 400 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 PRINTS 60kDa chaperonin signature 137 163 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 PRINTS 60kDa chaperonin signature 459 484 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 PRINTS 60kDa chaperonin signature 193 220 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 PRINTS 60kDa chaperonin signature 507 528 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 MobiDBLite consensus disorder prediction 73 108 - -
Cmu05g2389 704 FunFam 60 kDa chaperonin 301 482 - -
Cmu05g2389 704 SUPERFAMILY GroEL-intermediate domain like 251 314 IPR027410 -
Cmu05g2389 704 NCBIfam chaperonin GroEL 112 638 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 110 639 IPR001844 GO:0006457(PANTHER)|GO:0009570(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 CDD GroEL 112 635 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Cmu05g2389 704 Gene3D GroEL 301 482 IPR027409 -
Cmu05g2389 704 MobiDBLite consensus disorder prediction 68 113 - -
Cmu05g2389 704 SUPERFAMILY GroEL equatorial domain-like 121 633 IPR027413 -
Cmu05g2389 704 Gene3D - 124 634 IPR027413 -
Cmu05g2389 704 Pfam TCP-1/cpn60 chaperonin family 133 636 IPR002423 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2389 K04077 - - csv:101209342 998.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2061 Cmu-Chr3:29002597 Cmu05g2389 Cmu-Chr5:33110657 1.70E-217 dispersed
Cmu05g2389 Cmu-Chr5:33110657 Cmu06g0735 Cmu-Chr6:8615173 1.30E-122 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67