Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2393 ATGGGGAATGTGGATGTAGTTAGGAACCAGGATATGGTTGGTTGTTCTTCTTCCACTGCTCCTGTGGTAGAGTCATTTAGCTCTACTATCTGGGAACAAGCAGCTAATTGTCAAAACTTGGGAATTTGCAACATTCAAGGCCATAACAACTCTACTACTTCAAATAGCATAGCAATGAGTAAGGCCAGTGGCTGTCCAGTTTCTTTGAGCAGTGACATTGATAGAACACTTGACATCAGCTGGAACCTGTCACATAATATGTTAAAAGGGGGAGTTTACCTACCTAATTTTCCCAGTGTGATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCATTTATTGAACGTGCAGCCAGGTTTTCCTGCTTTAGTGGTGGAAATTTTGGTGATATTGTTGGCCATTTCAGCATTCCTGAGCCTATTGGTGTTTTTTCCAGAGGCATGGGAGTAATACCTGAGAGATGGGATGAGATTCCACGAAATGGGTTAGGTTCAGTATTCGGAACTGGAGGACAATTTCAAAGAAACATGGTTAACAGTGAATCTTCCAAGCCTCTTTCTTTGACTAATGAACATGGAGCTACTGAAAGGGGATCACCTAAAAATGGAAGCCCTTTGAAATGGGATGATCGTGGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGATGAAGCTGAGTTTAGCGGTCATGATGGTTCAGGTGAGCCATGTACGTTAGAGGCCCCAGGTAAGGAACTTTCTGCCAAGGGCCTCGGCTCAAGGAAAAGGAAAAGAAGTGGACAGAAGACTGAACTTGATCAAGCCAATGGACCTCTGCAACAAACTACGGTTTCAGCTAAGGATGATGCTGAAACTCAGCGAAAAGGAGATCAAAATCCGAGTTCAACTGCAAACAAGTGTACAGGAAAACATAATAAACAGGTACCTCAACCTTCTGATCCACCAAAGGAAGAGTATATTCATGTTAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGGGTAAGGAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGAACTAGTCCCTGGTTGCAGCAAGGTTACTGGAAAGGCGGTGATGCTAGATGAAATCATTAACTATGTCCAATCACTGCAGCGACAAGTCGAGTTTTTATCAATGAAACTCGCTACCGTGAATCCAAGGTTGGATATTAACATTGATGGACTCATAGCCAAAGATATTCTTCAATCACGAGTTGGTCCATCGTCGACATTGGGATTTTCTTCACATATGCCCATTGCTTGTCCCCCACCTCATATTTCTCATAATGGACATATCCCAAGCAATTTTCCTGCCATAGGGAGCTCTGAGATGTTAAGAAGCACAATGAATTCCCAGATGACTACAAGGTCGGGTGGATTTAAGGATCCTACTCAGATAAAGAATGTGTGGGATGGTGAACTCCAAAACATTGTGCAGATGAGCTTTGGGATGTCCACTACCCCCAATTGTTTAGAAATTGAAGGATCTGATTCACCAGGCAACACAAAAGTTGAACATTGA 1551 43.13 MGNVDVVRNQDMVGCSSSTAPVVESFSSTIWEQAANCQNLGICNIQGHNNSTTSNSIAMSKASGCPVSLSSDIDRTLDISWNLSHNMLKGGVYLPNFPSVIPPSLSQLPADSSFIERAARFSCFSGGNFGDIVGHFSIPEPIGVFSRGMGVIPERWDEIPRNGLGSVFGTGGQFQRNMVNSESSKPLSLTNEHGATERGSPKNGSPLKWDDRGKHAVDGSANESDEAEFSGHDGSGEPCTLEAPGKELSAKGLGSRKRKRSGQKTELDQANGPLQQTTVSAKDDAETQRKGDQNPSSTANKCTGKHNKQVPQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDGLIAKDILQSRVGPSSTLGFSSHMPIACPPPHISHNGHIPSNFPAIGSSEMLRSTMNSQMTTRSGGFKDPTQIKNVWDGELQNIVQMSFGMSTTPNCLEIEGSDSPGNTKVEH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33161783 33164990 + CmPI595203_05g023930.1 Cmu05g2393 417307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2393 516 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 105 492 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu05g2393 516 Pfam Helix-loop-helix DNA-binding domain 333 381 IPR011598 GO:0046983(InterPro)
Cmu05g2393 516 MobiDBLite consensus disorder prediction 176 318 - -
Cmu05g2393 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 380 IPR011598 GO:0046983(InterPro)
Cmu05g2393 516 Gene3D - 327 400 IPR036638 GO:0046983(InterPro)
Cmu05g2393 516 FunFam Basic helix-loop-helix transcription factor 327 399 - -
Cmu05g2393 516 SMART finulus 336 386 IPR011598 GO:0046983(InterPro)
Cmu05g2393 516 MobiDBLite consensus disorder prediction 204 232 - -
Cmu05g2393 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 398 IPR036638 GO:0046983(InterPro)
Cmu05g2393 516 MobiDBLite consensus disorder prediction 291 310 - -
Cmu05g2393 516 MobiDBLite consensus disorder prediction 266 282 - -
Cmu05g2393 516 CDD bHLH_AtBPE_like 320 405 - -
Cmu05g2393 516 MobiDBLite consensus disorder prediction 176 198 - -
Cmu05g2393 516 MobiDBLite consensus disorder prediction 251 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0705 Cmu-Chr1:7900813 Cmu05g2393 Cmu-Chr5:33161783 1.50E-107 dispersed
Cmu05g2393 Cmu-Chr5:33161783 Cmu05g2702 Cmu-Chr5:35517306 3.00E-44 dispersed
Cmu05g2393 Cmu-Chr5:33161783 Cmu02g0518 Cmu-Chr2:4806900 6.50E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6270 PF00010 HLH 5.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2393 - - - 0.0