Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2402 ATGAGAGCCTTTTCGGTTTCTAAAGTGATTAGTCAAAGTTCATGGTGTCTAAAAGTTAACGTTCATTCAAGGACAACTGTAAGTTGTTCATCGAGGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATACGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCGGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTATTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTGCAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTCGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTCATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACAATTATCCAATGTTTATGCAAGGGAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGTTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTGCTATGGTGGTTAAATCTGGCTTTATTTCACATCGATCCATTCCTTGCTATGATAACTTGTCCTTTGGCATAAAAGGGTGTAGAGGATAA 2595 39.15 MRAFSVSKVISQSSWCLKVNVHSRTTVSCSSRILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDTLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVILYNIMIDGYVRLGDIAEAMQLYCRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRSNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTHTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKGRDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNVFHQQGDNSLVLEFLAMVVKSGFISHRSIPCYDNLSFGIKGCRG 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33205454 33210331 - CmPI595203_05g024020.1 Cmu05g2402 417316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 90 235 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 740 851 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 495 616 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Cmu05g2402 864 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 427 679 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 236 348 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 617 737 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 603 636 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 288 322 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 463 496 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 323 357 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 708 740 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 743 776 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 534 566 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 673 706 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 638 671 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 568 601 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 393 426 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 780 812 IPR002885 -
Cmu05g2402 864 NCBIfam pentatricopeptide repeat 428 461 IPR002885 -
Cmu05g2402 864 SUPERFAMILY HCP-like 507 712 - -
Cmu05g2402 864 Pfam PPR repeat 386 416 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 418 490 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 Gene3D Tetratricopeptide repeat domain 349 417 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Cmu05g2402 864 Pfam PPR repeat family 670 718 IPR002885 -
Cmu05g2402 864 Pfam PPR repeat family 285 333 IPR002885 -
Cmu05g2402 864 Pfam PPR repeat family 600 649 IPR002885 -
Cmu05g2402 864 Pfam PPR repeat family 531 579 IPR002885 -
Cmu05g2402 864 Pfam PPR repeat family 743 789 IPR002885 -
Cmu05g2402 864 Pfam PPR repeat family 426 474 IPR002885 -
Cmu05g2402 864 SUPERFAMILY TPR-like 357 560 IPR011990 GO:0005515(InterPro)
Cmu05g2402 864 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2402 - - - 0.0