Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2416 ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA 474 44.94 MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33299877 33301564 - CmPI595203_05g024160.1 Cmu05g2416 417330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2416 157 FunFam protein CRABS CLAW isoform X3 92 151 - -
Cmu05g2416 157 SUPERFAMILY HMG-box 86 138 IPR036910 -
Cmu05g2416 157 MobiDBLite consensus disorder prediction 66 99 - -
Cmu05g2416 157 Pfam YABBY protein 15 140 IPR006780 GO:0007275(InterPro)
Cmu05g2416 157 MobiDBLite consensus disorder prediction 66 88 - -
Cmu05g2416 157 CDD HMG-box_SF 101 137 - -
Cmu05g2416 157 Gene3D High mobility group box domain 89 142 IPR036910 -
Cmu05g2416 157 PANTHER PROTEIN YABBY 6-RELATED 13 153 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2416 Cmu-Chr5:33299877 Cmu05g2432 Cmu-Chr5:33413880 1.10E-85 dispersed
Cmu05g2416 Cmu-Chr5:33299877 Cmu11g0298 Cmu-Chr11:3502136 1.30E-22 transposed
Cmu05g2416 Cmu-Chr5:33299877 Cmu01g0368 Cmu-Chr1:3862439 1.30E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6271 PF04690 YABBY 1.00E-42 CL0114 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2416 K25796 - csv:101219863 249.98