Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2421 ATGGGGGAAGCAAACGAAGGAAGAAGTAGAGGAATGGAGAAAGTTCCTCTACAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCAATTCACAACAGACCCAAATTCGGGCGTTTAATGAAGAAGAAGAAGAAGATGGAGAGGAGATTGAGCTTAATCTTGGGCTTTCACTAGGGGGTCGATTTGGGGTTGACAAAAATTCCAAGAAGCTTATTCGATCATCGTCCATAGCCGGTACCATGCTTTTGAGGGACGATGAGGCTTCTACTCCAGCAGCAGTATCGTACCCGGCGGCGCTTATTCGGACCTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAAAGGAGACGATTTGAGAAGCAGAGGAATAAGGATGGGATTGGGATGGGGACCGGCGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGAAGGCCTTACAGGATTGAATTTGAGAGAGAAAAGGCCTGGTTCGGCTATTTCGACGGTGGCACCGCCATTCGGGTTGCCAACGTGGGCTGCAGCTGCTCGACAGGCTCTTACTGGCGGAATTGTGGATGAGGGTGGCAAAGGCAAAGGTGGCTGTGCATCAGGTGGAGGCGGAGGCTTACCGGCTGTCGGGCAGCCTGCCTCTCAGTGCTCCGCTGAATCGCAGGGCGGAAGCTCGTCGGGAATGTCGGAATTGGACAGTAAACACATCCAAGGATCAAGCAGTTACGGTGAAGCGAGAAGCTCCTCACAAGAGCGAGGCAACCCAGAGGCTGCAGGTTCTTCAGGATCGAAGATGTGTGAGAACCCATCTGGCAGTTCCAAAACAGAGACGAAAAATCCATCCAAGAAACCCGATTCAGGTGAGAACAGGGGAAGAGAAGCGGGAACGACATCGATGGAAGACATGCCGTGTGTGTTTACAATAGGGGACGGGCCAGATGGGAGAAGGGTGGAAGGAATTCTTTACAAGTATGGAAAAGGTGAGGAAGTTAGGATAATGTGTGTTTGCCATGGGAAGTTTCTGTCACCAGCTGAGTTTGTGAAGCATGCTGGTGGAAAAAATGTGGCTCATCCCTTAAGACATATAGTTGTCAATCCCAATTCTGGTCCCTGTTTGTGA 1164 50.6 MGEANEGRSRGMEKVPLQTEKYPTDLLQRFLCSNSQQTQIRAFNEEEEEDGEEIELNLGLSLGGRFGVDKNSKKLIRSSSIAGTMLLRDDEASTPAAVSYPAALIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGTGGCFEEERREIEGLTGLNLREKRPGSAISTVAPPFGLPTWAAAARQALTGGIVDEGGKGKGGCASGGGGGLPAVGQPASQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQERGNPEAAGSSGSKMCENPSGSSKTETKNPSKKPDSGENRGREAGTTSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPCL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33346471 33349198 + CmPI595203_05g024210.1 Cmu05g2421 417335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2421 387 Pfam Putative nuclear localisation signal in Ninja/AFP proteins 104 140 IPR032310 -
Cmu05g2421 387 MobiDBLite consensus disorder prediction 221 325 - -
Cmu05g2421 387 MobiDBLite consensus disorder prediction 228 292 - -
Cmu05g2421 387 Pfam Tify domain binding domain 346 379 IPR032308 -
Cmu05g2421 387 Pfam Ethylene-responsive binding factor-associated repression 49 83 IPR012463 -
Cmu05g2421 387 Coils Coil 120 140 - -
Cmu05g2421 387 PANTHER AFP HOMOLOG 2 1 382 IPR031307 GO:0005634(PANTHER)|GO:0007165(InterPro)|GO:0009737(PANTHER)|GO:0045892(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0260 Cmu-Chr7:2550424 Cmu05g2421 Cmu-Chr5:33346471 7.30E-19 transposed
Cmu04g1215 Cmu-Chr4:26671311 Cmu05g2421 Cmu-Chr5:33346471 1.90E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2421 - - - 0.0