Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2423 ATGTGGAAAAGAGTTCTATGTTCAATTCCTCACAGGTCGTTTTCCTCTGCGCCAGAAACCCCATCTCTCTACTCCTTCCTCCAACCTTCTCTTTTTGCCCTAAAGAGAACCCCATTTTCGCCTTCTCAAGACTCCACCGACCTCCGTCAGGATCCAACTCCTCAAATTTTAACTCCAGATCGCGTCGCCGCCGTAGAAACGGCCCTCCACAAGTCCCTCCTCACCAGCGACACTGATGAGGCATGGAAATCCTTCAAATTGCTCACGAGAAGCTCTGTTTTCCCATGTAAGCCTCTTACCAATTCACTTATTGCTCACTTGTCCTCAATTGGGGACGTTCATAATCTGAAAAGAGCCTTTGCATCTGTGGTGTTTGTTATTGAGAAGAAACCTGAACTGTTGGATTTTGGATCTGTTAAAGCTTTATTGGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATCAAATGCATGTTTAAGAATCGATGCTTCGTGCCTTTTAGTGTTTGGGGCAATGAACTTGTTGATATTTGCAGACAGAATGGGAGTTTGATTCCCTTTTTAAGAGTTTTTGAAGAGAACTGTAGGATTGCTTTAGATGAGAGCTTGGATTTTATGAAACCAGACCTTATTGCTTGTAATGCAGCACTTGAAGGGTGTTGCTATGAGCTTGAATCTGTAACAGATGCTGAGAAAGTCGTTGAAACGATGTCACTTTTGTATCTTCGGCCTGATGAAGTGAGTTTTGGTGCTCTTGCTTATTTGTATGCATTGAAGGGGCTTGAACAGAAGATAATAGAGTTAGAAGTCTTGATGGGAAATTTTGGTTTTAATCATAAAGATCTCTTTTTTAGTAGTTTGATTAGTGGATACGTTCATGCGAGCAACTTTGCTGCTGTTTCCAAGACTATGTTGCGTAGTTTAAAAGATGAATGTGGAGCACATGTACATTTTGGTGAAAAAACGTATTTGGAAATGGTTAAGGGGTTTATTCAAAGTGGAAATCTGAAGGAATTATCTGCATTGATTGTCAATGCTAAGAATTTGGAGTCTTCATCAGAAGTTGATGGATCTATTGGATTTGGTATCATTAATGCATGTGTTAATATTGGATGGTTAGATAAGGCGCATGACATTCTGAACGAAATCAATTCCCAGGGAGTTTCCCTGGGCCTTGGAGTCTATCTGCCAATCTTGAAAGCTTACAGGAAGGAGCATCGAACAGCTGAAGCCACCCGATTAATCATGGATATTAGCAGTTCTGGGCTTCAGTTGGACGCAGAGAGTTATGATGCTCTAATAGAGGCATCGATGTCGAACCAAGATTTTCAGTCAGCTTTTGCTTTGTTCAGGAATATGAGAGAAACAAGAAAATCTGACATGAAAGCTAGTTATCTAACTATTATGACTGGCTTAATGGAGAACCATAGGCCTGAGTTGATGGCTGCCTTCTTAGATGAAGTTGTTGAAGATCCTCTTGTGGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGACTCGAGGATGCGAGGAGAACATTCCGAAGAATGAAATTTCTGCAGTTTGAACCAAATGAGCAGACCTTCTTGTCCCTAATTAATGGCTATGTGTCTGCAGAGAGATATTTCTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGATTACAGCAAATGGGGAGACAGGTATCAAACTTGACAACAACTTGGTTGATGCATTCCTGTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTCGTTGAAAAAACTAAGGATACGAAGATCTTTGTTGATAAGTGGAAGTATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGTTGAGGAGGAGGAACCACAGGAAAATGGAATCATTAATTGCTTTCAAGAACTGGGCTGGTCTGAATGCTTGA 1968 41.26 MWKRVLCSIPHRSFSSAPETPSLYSFLQPSLFALKRTPFSPSQDSTDLRQDPTPQILTPDRVAAVETALHKSLLTSDTDEAWKSFKLLTRSSVFPCKPLTNSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIKCMFKNRCFVPFSVWGNELVDICRQNGSLIPFLRVFEENCRIALDESLDFMKPDLIACNAALEGCCYELESVTDAEKVVETMSLLYLRPDEVSFGALAYLYALKGLEQKIIELEVLMGNFGFNHKDLFFSSLISGYVHASNFAAVSKTMLRSLKDECGAHVHFGEKTYLEMVKGFIQSGNLKELSALIVNAKNLESSSEVDGSIGFGIINACVNIGWLDKAHDILNEINSQGVSLGLGVYLPILKAYRKEHRTAEATRLIMDISSSGLQLDAESYDALIEASMSNQDFQSAFALFRNMRETRKSDMKASYLTIMTGLMENHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLINGYVSAERYFCVLMLWNELKWKITANGETGIKLDNNLVDAFLYALVKGGFFDAVMQVVEKTKDTKIFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMESLIAFKNWAGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33355593 33357560 - CmPI595203_05g024230.1 Cmu05g2423 417337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2423 655 Gene3D Tetratricopeptide repeat domain 365 466 IPR011990 GO:0005515(InterPro)
Cmu05g2423 655 Pfam PPR repeat 367 392 IPR002885 -
Cmu05g2423 655 Pfam PPR repeat family 505 548 IPR002885 -
Cmu05g2423 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cmu05g2423 655 PANTHER BNAC05G43320D PROTEIN 15 654 - -
Cmu05g2423 655 Gene3D Tetratricopeptide repeat domain 63 363 IPR011990 GO:0005515(InterPro)
Cmu05g2423 655 NCBIfam pentatricopeptide repeat 505 537 IPR002885 -
Cmu05g2423 655 Gene3D Tetratricopeptide repeat domain 467 653 IPR011990 GO:0005515(InterPro)
Cmu05g2423 655 Pfam Pentatricopeptide repeat domain 418 461 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2423 Cmu-Chr5:33355593 Cmu09g0689 Cmu-Chr9:6370148 3.40E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2423 - - - 0.0