Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2428 ATGGCTTCGATCACAGCCGTAATTCAGTCTCCAATTCATCGGTTACCTTCCTTTCGATTGTCGTCTCCTAATAGAACAGTTCCCGCCAATTATTTCGTTCTTCAATGTCGATCACTTGCTTCTAAAGCTTTGAACTCGCCGTTTTCACCGTTGACGGAGAATCGAACTGTTTCGCCATCGGTGGAACTATCTAGCAAGGCTATTGGGCTCTTAAGTTCTAGACAACCGTTAAAGTCTCGAAGTGTAGTTCGTCTGCCGGTGGTGAGGGCGGCTGCAGCTGAAGCCGACGGAGCTTCCGATGGGTTGAATAGCCCTTCGAAGAGCTTTGCTGCAAGATTCCCAGCACTCATTACTGGTTTCTACTTCTTTATGTGGTACTTTTTAAATGTTATCTTCAACATACTCAACAAAAAAGTTTACAATTATTTTCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGCTGGATATTGTCTCATTTCTTGGGCTGTAGGTCTCCCAAAACGTGCCCCGATAGATAAGGAGCTCTTGCTATTATTGACTCCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACCATTAAAGCTCTGGAGCCATTCTTTAATGCTGCTGCTTCTCAATTTGTTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTTTCTCTAGCACCTGTTGTTTTAGGTGTGTCAATAGCATCACTAACGGAACTTTCCTTCAATTGGACTGGCTTTGTGAGTGCAATGATTTCAAACGTTGCATTTACCTATAGAAGTATCTATTCGAAGAAAGCAATGACAGGAATGGACAGCACAAACGTGTATGCATACACCACAATAATCGCTCTTTTGTTTTGCATTCCTCCTGCAGTTATGATTGAGGGACCGCAGTTGCTGCAGCATGGTTTTAAGGATGCCATTGCCAAAGTGGGTCTACAAAAGTTCCTGTCTGACCTTTTCTGGATCGGCATGTTTTATCATCTATACAATCAGCTTGCTGCTAATACTCTTGAACGTGTTGCACCATTAACACACGCTGTAGGAAATGTATTGAAGCGAGTTTTTGTGATTGGATTCTCCATTGTTGTTTTTGGCAATAAGATTTCAACTCAAACTGGAATTGGTACTGCTATAGCAATTGCTGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAACAAAAACGGAGGGCTGCTAAAATTCCATCATCATAG 1272 42.45 MASITAVIQSPIHRLPSFRLSSPNRTVPANYFVLQCRSLASKALNSPFSPLTENRTVSPSVELSSKAIGLLSSRQPLKSRSVVRLPVVRAAAAEADGASDGLNSPSKSFAARFPALITGFYFFMWYFLNVIFNILNKKVYNYFPYPYFVSVIHLLVGAGYCLISWAVGLPKRAPIDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGHQIPFSLWLSLAPVVLGVSIASLTELSFNWTGFVSAMISNVAFTYRSIYSKKAMTGMDSTNVYAYTTIIALLFCIPPAVMIEGPQLLQHGFKDAIAKVGLQKFLSDLFWIGMFYHLYNQLAANTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEQKRRAAKIPSS 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33382384 33386280 - CmPI595203_05g024280.1 Cmu05g2428 417342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2428 423 PANTHER SOLUTE CARRIER FAMILY 35 112 405 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cmu05g2428 423 Pfam Triose-phosphate Transporter family 118 404 IPR004853 -
Cmu05g2428 423 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 116 414 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cmu05g2428 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 298 405 - -
Cmu05g2428 423 SUPERFAMILY Multidrug resistance efflux transporter EmrE 155 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2272 Cmu-Chr1:35029488 Cmu05g2428 Cmu-Chr5:33382384 1.20E-148 dispersed
Cmu05g1512 Cmu-Chr5:23003661 Cmu05g2428 Cmu-Chr5:33382384 5.40E-62 dispersed
Cmu05g2428 Cmu-Chr5:33382384 Cmu10g1364 Cmu-Chr10:6606077 2.60E-62 dispersed
Cmu05g2428 Cmu-Chr5:33382384 Cmu01g2155 Cmu-Chr1:34178698 2.80E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2428 K15283 - csv:101221040 696.427