Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2432 | ATGATGGGTCTGAAAAGTGGAGCTGAGGGTACGATGCTGAGTATGGTTGGGATTCCATGCAGACGTTTATTGGATACGGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCATTTTTAAGCACAAGACCTCCTTTACAGGGCCAATGCATTGATCATCCTCTAAGTTTTCAGTCTCAGGTTGGGTTCTCCAATGATATACGAAAGGGTGCGTCCACGTCGTCCACTTCCACGTCCTCTTCAATGCCAAATGAGTCCCCTTCTCCAAATTTTGTTGTTAAACCCCCTGAGAAGAAACACAGACTTCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATTCAACGTATCAAAGCTGCCAACCCAGAAATACCTCATCGAGAAGCATTCAGTGCAGCAGCAAAAAACTGGGCAAGGTACATCCCAAATTCAGCTGCTGGGTCGGTTTCTGGAACTCATCACAACAACGAATGA | 474 | 44.94 | MMGLKSGAEGTMLSMVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNDIRKGASTSSTSTSSSMPNESPSPNFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHHNNE | 157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33413880 | 33415578 | + | CmPI595203_05g024320.1 | Cmu05g2432 | 417346 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2432 | 157 | FunFam | protein CRABS CLAW isoform X3 | 92 | 151 | - | - | |
Cmu05g2432 | 157 | SUPERFAMILY | HMG-box | 86 | 138 | IPR036910 | - | |
Cmu05g2432 | 157 | MobiDBLite | consensus disorder prediction | 66 | 99 | - | - | |
Cmu05g2432 | 157 | Pfam | YABBY protein | 15 | 140 | IPR006780 | GO:0007275(InterPro) | |
Cmu05g2432 | 157 | MobiDBLite | consensus disorder prediction | 66 | 88 | - | - | |
Cmu05g2432 | 157 | CDD | HMG-box_SF | 101 | 137 | - | - | |
Cmu05g2432 | 157 | Gene3D | High mobility group box domain | 89 | 142 | IPR036910 | - | |
Cmu05g2432 | 157 | PANTHER | PROTEIN YABBY 6-RELATED | 13 | 153 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010582(PANTHER)|GO:0045165(PANTHER)|GO:0048366(PANTHER)|GO:0048479(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2416 | Cmu-Chr5:33299877 | Cmu05g2432 | Cmu-Chr5:33413880 | 1.10E-85 | dispersed | |
Cmu05g2432 | Cmu-Chr5:33413880 | Cmu06g1183 | Cmu-Chr6:22736571 | 2.20E-22 | dispersed | |
Cmu05g2432 | Cmu-Chr5:33413880 | Cmu11g0298 | Cmu-Chr11:3502136 | 1.30E-22 | transposed | |
Cmu05g2432 | Cmu-Chr5:33413880 | Cmu01g0368 | Cmu-Chr1:3862439 | 1.30E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6272 | PF04690 | YABBY | 1.00E-42 | CL0114 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2432 | K25796 | - | csv:101219863 | 249.98 |