Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2433 ATGGAGAATTCTAAAGAAAACAAGTTTGTGTGCAACTTTTGCCACAAGAGCTTCACGTGTGGGAAGTCTTTGGGAGGTCATATCAGAATTCACAAGAATGAGAAATCATCCCGAGTTGCAGAGAAGCAAAGGGAAAGAAGCTTGAAGTTTCAAGTTCCGACAGAGAGGAGAAGAAGCAAGAGAGATTTAGAATCGGAGGTTGGTAATGGGAATTCAGGCTATGGCTTGAGAGAGAACCCCAAAATAACACGGAGGTTTGCTGATTCGGGATACAGTTCAAGGCAGGAGAAGTTTTGTAGAGAATGTGGACAAGGGTTTCAGTCCTCAGAAGCTTTGAGTTGGCACTTGGCTTGTCACTCTGGAAACGAAAGGGAAAACAGAAGGCTTCAATACAATTATGGGATCACACATCAGAAGCGGGAGTTTATAGAAGAAAATCAATCGGACATTCCTGAGAGAGTACGAGAGGCGGCTATGTGCTTGATGATGATGTCTAAAGCTCCGAGATTTTCAGGATTGGAAGGTCTGAATTCGGCTGCGGAATCCTCTGATAGTAAATCATCTTCTCGTCATTTTAGGGAAAGTGACACATCTGCTTCTTACTCTAATGGAGGACTAGAAATGAGAGAAGTCACAGGTAGGATCAACAAGTTGGAAGTTTCTGAATTCGACGGTGAGAATTCCGACTCTGATAATTTCAGGAAAGAAATCTGCAAGAAGGTTAAATTGAAACTGTCTGTTCATCGGGCTCTTTTGGATGAAGAATATAAGAAACCAGATTTCAAATTTGGAGTCAGGGTAGGAAGAGCAAGTGCAGATATTCTAAAGAATTCGATGAAAACTAAGAAAAATGATGATCAAGTGCATGCATCTTACAAGTACGAGCTGAGAAAGAGGTTGAAAAATGGATCATACAGTCCTGATCTCTGGGAGGGATCAAGCAAGAAGATGCCTAGCGAGAACTTCCGTTCTCATGACAGAGAAACCTATACAAGAATGAGCAATGGCTGCGAGTGGACGCATCAGTCAGGTGAAAACAGCGTAAATACCACTACCAATTCCATCTCTATACCATCTAGGGAGTTAATTGAGTCAAGCAATGGCAAAAACAAGGGTCACCAGGATACTTCTGGAAATGAAGAGAAGAAATTAGGGCCCAAGAGAAAACACAAGTGCCCAATTTGCTTCAAAGCCTTTAAATCAGGCCAGGCATTGGGGGGTCATAAGAGGTCTCATGTGGTCGGAAGTTTAGAGGATGCGTCTATAGTGACAAGGCAAGAGTCCAATGGGATAACTGGTCTAATTGATCTAAATGTTCCTGCTCCTATGGAAGAAGAGGAAAGTGGGAGATGA 1353 42.57 MENSKENKFVCNFCHKSFTCGKSLGGHIRIHKNEKSSRVAEKQRERSLKFQVPTERRRSKRDLESEVGNGNSGYGLRENPKITRRFADSGYSSRQEKFCRECGQGFQSSEALSWHLACHSGNERENRRLQYNYGITHQKREFIEENQSDIPERVREAAMCLMMMSKAPRFSGLEGLNSAAESSDSKSSSRHFRESDTSASYSNGGLEMREVTGRINKLEVSEFDGENSDSDNFRKEICKKVKLKLSVHRALLDEEYKKPDFKFGVRVGRASADILKNSMKTKKNDDQVHASYKYELRKRLKNGSYSPDLWEGSSKKMPSENFRSHDRETYTRMSNGCEWTHQSGENSVNTTTNSISIPSRELIESSNGKNKGHQDTSGNEEKKLGPKRKHKCPICFKAFKSGQALGGHKRSHVVGSLEDASIVTRQESNGITGLIDLNVPAPMEEEESGR 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33423257 33424609 + CmPI595203_05g024330.1 Cmu05g2433 417347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2433 450 MobiDBLite consensus disorder prediction 340 373 - -
Cmu05g2433 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cmu05g2433 450 SUPERFAMILY beta-beta-alpha zinc fingers 5 36 IPR036236 -
Cmu05g2433 450 SUPERFAMILY beta-beta-alpha zinc fingers 98 412 IPR036236 -
Cmu05g2433 450 Gene3D Classic Zinc Finger 1 69 - -
Cmu05g2433 450 MobiDBLite consensus disorder prediction 34 65 - -
Cmu05g2433 450 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Cmu05g2433 450 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 133 - -
Cmu05g2433 450 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Cmu05g2433 450 Pfam C2H2-type zinc finger 390 412 IPR013087 -
Cmu05g2433 450 Pfam C2H2-type zinc finger 9 31 IPR013087 -
Cmu05g2433 450 Pfam C2H2-type zinc finger 99 120 IPR013087 -
Cmu05g2433 450 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Cmu05g2433 450 SMART c2h2final6 9 31 IPR013087 -
Cmu05g2433 450 SMART c2h2final6 390 412 IPR013087 -
Cmu05g2433 450 SMART c2h2final6 97 119 IPR013087 -
Cmu05g2433 450 MobiDBLite consensus disorder prediction 34 78 - -
Cmu05g2433 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 412 IPR013087 -
Cmu05g2433 450 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Cmu05g2433 450 MobiDBLite consensus disorder prediction 340 387 - -
Cmu05g2433 450 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2433 Cmu-Chr5:33423257 Cmu07g0738 Cmu-Chr7:17296583 5.90E-12 dispersed
Cmu04g1232 Cmu-Chr4:26830624 Cmu05g2433 Cmu-Chr5:33423257 2.10E-27 wgd
Cmu05g2433 Cmu-Chr5:33423257 Cmu06g1631 Cmu-Chr6:27483420 2.40E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6273 PF13912 zf-C2H2_6 6.20E-09 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2433 - - - 0.0