Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2438 ATGGCAACAATGGCCTCCAAAGTCTTGTTCCTCGTTCTAATTTGCTTCTTTTCATTTTCATCTTCCATTTTAGCAGAATTCGTTAAAGTTTCAGTGAAAGGAGTGACCACCATTGCTGAAACTGACAACGATTTCATTTGTGCTACTATAGATTGGTGGCCTTCTAATAAATGCGATTATGGCCAATGCCCATGGGGAAAAGCTGGCGTTCCTAATTTGGATCTTCAGAACGTTATCTTAACCAAAGCAATCAAGGAGTTCAATCCTTTGAGAATCCGAGTTGGAGGATCACTTCAAGATCAAATCATTTACAGAGTTGGAAACTCGGTGAAGAAGTGTCCTCAAATGAAGAAACAGAGTGATGGTTTGTTTGGATTCAGCAAAGGTTGTTTTACCATGGAAAGATGGGATGATTTTAATGAGCTATTCAACAAAACATCAGCTCGGGTTACGTTTGGTTTGAATGCTCTGATGGGTAAAACACCAGCCAATGATGGAAGTATCAACTGGGTTGGTGATTGGGATCCTCGTAATGCTCGAGATTTCATCCGATACACTGCCTCTAAAGGATACAAAATCGATTCTTATGAACTGGGAAATGAACTTTGTGCGAGCGGAGTTTCGGCAAGGCTTGAGCCGGATCAATATGGTAAAGATCTGACTCTAATGAGAAAAGTAGTTGAAGAGGTTTATCATGATGCCAACAACAGACCCAAAATTCTTGGACCCGCGGGTTTCTTTGACAAAGAATGGTTCAAAACTTTCCTTCAAAACACTGCCCCAAATGTTGTGGATGGAGTCACTCACCATATTTACAATCTTGGAGCAGGTGTTGATCCTACTCTTATAAATAAGGTACAAGACCCTTATGTTTTGGACCAAATTGCTCAAACTTTTAAGGAAGCTATGGAAGTTTCACAGAGCTTTGGGCCATGGTCTAAGCCTTGGGTTGGTGAATCTGGTGGTGCTTATAACAGTGGTGGCAAAACTGTTTCTCATACTTTTGCCAATGGATTCTGGTATTTGGATCAACTGGGGATGACTGCCACATTCAATCATCAGGTTTATTGCAGACAAGCCTTGATTGGTGGAAACTATGCTTTGCTTAATACCACTAGTTTCATCCCTAACCCTGATTATTATAGCGCTCTGCTATGGCACAGATTAATGGGAAAGAAGGTCCTCTCAGCATCCCACGACAGCTCTCCATACCTTCGTGTTTATTCTCACTGCACCAAAAACAACGAAGGCGTTACAGTGCTTCTAATCAACATGTCAAATTCGACCACATTCGATGTAAATATTGTAAACGACAGAAATGTTTATCCAAACTTGATGATAGGCAGCAAATTAAAGGCAAGAGAAGAGTACCATTTAACTCCCAAAGACGGCAATATTCAAAGCGACGTCATGCTTTTGAATGGAACTCCTCTTCAACTTACTCCAACCAGCTTGGACATTCCCGACATGTCGCCCAAGCTCGTCGATCCCACTTCCGCTGTGTCAGTTGCCCCTGATTCTTACGTCTTTGTCTCCATCAAAGACTTCAAAGCTCCTGCTTGCGCCTAA 1569 41.87 MATMASKVLFLVLICFFSFSSSILAEFVKVSVKGVTTIAETDNDFICATIDWWPSNKCDYGQCPWGKAGVPNLDLQNVILTKAIKEFNPLRIRVGGSLQDQIIYRVGNSVKKCPQMKKQSDGLFGFSKGCFTMERWDDFNELFNKTSARVTFGLNALMGKTPANDGSINWVGDWDPRNARDFIRYTASKGYKIDSYELGNELCASGVSARLEPDQYGKDLTLMRKVVEEVYHDANNRPKILGPAGFFDKEWFKTFLQNTAPNVVDGVTHHIYNLGAGVDPTLINKVQDPYVLDQIAQTFKEAMEVSQSFGPWSKPWVGESGGAYNSGGKTVSHTFANGFWYLDQLGMTATFNHQVYCRQALIGGNYALLNTTSFIPNPDYYSALLWHRLMGKKVLSASHDSSPYLRVYSHCTKNNEGVTVLLINMSNSTTFDVNIVNDRNVYPNLMIGSKLKAREEYHLTPKDGNIQSDVMLLNGTPLQLTPTSLDIPDMSPKLVDPTSAVSVAPDSYVFVSIKDFKAPACA 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33446755 33449974 + CmPI595203_05g024380.1 Cmu05g2438 417352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2438 522 PANTHER HEPARANASE-RELATED 27 522 - GO:0004566(PANTHER)|GO:0009505(PANTHER)
Cmu05g2438 522 Gene3D Glycosidases 67 388 - -
Cmu05g2438 522 FunFam heparanase-like protein 3 65 388 - -
Cmu05g2438 522 SUPERFAMILY (Trans)glycosidases 41 390 IPR017853 -
Cmu05g2438 522 Pfam Glycosyl hydrolase family 79, N-terminal domain 29 346 IPR005199 GO:0016020(InterPro)|GO:0016798(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2438 Cmu-Chr5:33446755 Cmu11g0328 Cmu-Chr11:3813313 3.40E-136 dispersed
Cmu04g1237 Cmu-Chr4:26872200 Cmu05g2438 Cmu-Chr5:33446755 1.20E-160 wgd
Cmu05g2438 Cmu-Chr5:33446755 Cmu06g1637 Cmu-Chr6:27508913 2.90E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2438 K07964 - csv:101214214 927.161