Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2447 ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGAGTTCTATGGAGTCACTCTTCGGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCCGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCTTTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACTTCCTTGCCGGTCGAGAAGACTAAAGATCAGCCGATGCAACCTCCGTTACAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACTGAATAAGCGGGCAAAGGATGTCGGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCGGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCAAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATAGTTACTGAGAAAAAAATTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTGTTAAAGGAAGAACAAATAACATAG 1479 46.11 MGDDDEQPPPPPPPSKSLRPTINLPPRSSMESLFGGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDQPMQPPLQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQLNKRAKDVGNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNIVTEKKISSNNTDPGNSRQQPAGLLLLKEEQIT 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33516691 33519324 + CmPI595203_05g024470.1 Cmu05g2447 417361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2447 492 MobiDBLite consensus disorder prediction 313 327 - -
Cmu05g2447 492 MobiDBLite consensus disorder prediction 250 282 - -
Cmu05g2447 492 SUPERFAMILY WRKY DNA-binding domain 370 438 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 SUPERFAMILY WRKY DNA-binding domain 197 257 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 FunFam WRKY transcription factor 183 258 - -
Cmu05g2447 492 Gene3D WRKY domain 185 258 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 Gene3D WRKY domain 363 439 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 MobiDBLite consensus disorder prediction 147 209 - -
Cmu05g2447 492 SMART WRKY_cls 198 256 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 SMART WRKY_cls 378 437 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 MobiDBLite consensus disorder prediction 329 353 - -
Cmu05g2447 492 MobiDBLite consensus disorder prediction 147 196 - -
Cmu05g2447 492 FunFam WRKY transcription factor 33 365 431 - -
Cmu05g2447 492 MobiDBLite consensus disorder prediction 1 20 - -
Cmu05g2447 492 ProSiteProfiles WRKY domain profile. 373 438 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 128 452 IPR044810 GO:0003700(InterPro)
Cmu05g2447 492 MobiDBLite consensus disorder prediction 296 363 - -
Cmu05g2447 492 Pfam WRKY DNA -binding domain 379 436 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 Pfam WRKY DNA -binding domain 199 255 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 MobiDBLite consensus disorder prediction 466 492 - -
Cmu05g2447 492 ProSiteProfiles WRKY domain profile. 199 257 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2447 492 MobiDBLite consensus disorder prediction 1 30 - -
Cmu05g2447 492 MobiDBLite consensus disorder prediction 263 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2447 Cmu-Chr5:33516691 Cmu10g1215 Cmu-Chr10:4932714 2.10E-71 dispersed
Cmu02g1914 Cmu-Chr2:33060920 Cmu05g2447 Cmu-Chr5:33516691 2.20E-59 transposed
Cmu03g0639 Cmu-Chr3:623807 Cmu05g2447 Cmu-Chr5:33516691 5.50E-68 transposed
Cmu06g1298 Cmu-Chr6:24159030 Cmu05g2447 Cmu-Chr5:33516691 9.60E-43 transposed
Cmu10g2952 Cmu-Chr10:35773692 Cmu05g2447 Cmu-Chr5:33516691 2.00E-63 transposed
Cmu11g0463 Cmu-Chr11:5135642 Cmu05g2447 Cmu-Chr5:33516691 4.30E-120 transposed
Cmu05g2447 Cmu-Chr5:33516691 Cmu08g0941 Cmu-Chr8:21751417 2.60E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6275 PF03106 WRKY 8.40E-26 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2447 - - - 0.0