Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2447 | ATGGGTGACGATGATGAACAGCCGCCGCCGCCGCCGCCGCCGTCCAAATCTTTGAGACCCACTATTAATCTGCCGCCACGGAGTTCTATGGAGTCACTCTTCGGCGGTGGGTCGGGTTTGGGATTTGGGTTTAGCCCAGGACCGATGACCCTCGTCTCGAGCTTCTTCTCTGATTCCGACGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCTATGGCATCGCCGGTGGCTGCCGTTCCTCCGTCGGCGTCTGAGTTTAAGGCTTCTACCGGTCTGCTCGAATCTCCGGAGCTTTTCTCGCCTGGTCAAGGACCTTTCGGAATGACTCATCAGCAAGCTTTGGCTCAGGTTACTATGCAGGCCGCAGAAGCCTATTCTCATAATCAAATGCAAGCAGCATCTTTTTCTTCATCAGTAGCACCCTCTGCATCCTCCTCACAGCTTTTGACTTCCTTGCCGGTCGAGAAGACTAAAGATCAGCCGATGCAACCTCCGTTACAGGACTCTGCAGTTGCATCCAAGGAGCCATCAGATAACTCTCAATCAGAGCAGAGATTGCAATCTTCTTTGTGTAATGTTGATAGGCCTACTGATGATGGATACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGCACCCGAATTGTCCTGTCAAGAAAAAGGTTGAACGATCTCTGGAAGGACAAGTCACTGAAATTATCTACAAGGGCGAGCACAACCATAAACGACCTCAACTGAATAAGCGGGCAAAGGATGTCGGAAATTCTAACGGATATTCGAGTATTCATGGAAATCCTGAGCTATCTTCTCAAGTTCAGAGTGGATATTTGAATAAATTGAATGAGCAGACATCTGTGTCTTCCACTGCAAAGAAGGATCAAGAATTGAGTCATGTTACACACGAGCAGTTGTCGGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAAACTGGAGTGAATCGAAAAGATGAAGACGAACCTGATGCCAAGAGACGGAACACTGAGGTTAGAATTTCTGAGCCAGCATCTTCTCATAGAACTCTCACAGAATCCAGAATCATTGTGCAGACTACAAGTGAAGTCGATCTATTAGATGATGGCTACAGGTGGCGTAAGTATGGGCAGAAAATTGTTAAAGGCAACCCTTACCCAAGGAGCTATTATAAATGCACAACTCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACAGACCCGAAAGCTGTCATAACGACCTACGAAGGTAAACACAATCATGATGTTCCAGTTGGTAAAATCAGCAGCCACTGTTCAGTCAACAGTAACAATCCTCAACTAAAATCACAAAATATAGTTACTGAGAAAAAAATTTCAAGTAACAACACTGATCCTGGGAACTCTCGTCAACAGCCTGCTGGACTTTTACTGTTAAAGGAAGAACAAATAACATAG | 1479 | 46.11 | MGDDDEQPPPPPPPSKSLRPTINLPPRSSMESLFGGGSGLGFGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMASPVAAVPPSASEFKASTGLLESPELFSPGQGPFGMTHQQALAQVTMQAAEAYSHNQMQAASFSSSVAPSASSSQLLTSLPVEKTKDQPMQPPLQDSAVASKEPSDNSQSEQRLQSSLCNVDRPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLEGQVTEIIYKGEHNHKRPQLNKRAKDVGNSNGYSSIHGNPELSSQVQSGYLNKLNEQTSVSSTAKKDQELSHVTHEQLSGTSDGEGGSEIETGVNRKDEDEPDAKRRNTEVRISEPASSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPVGKISSHCSVNSNNPQLKSQNIVTEKKISSNNTDPGNSRQQPAGLLLLKEEQIT | 492 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33516691 | 33519324 | + | CmPI595203_05g024470.1 | Cmu05g2447 | 417361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 313 | 327 | - | - | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 250 | 282 | - | - | |
Cmu05g2447 | 492 | SUPERFAMILY | WRKY DNA-binding domain | 370 | 438 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | SUPERFAMILY | WRKY DNA-binding domain | 197 | 257 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | FunFam | WRKY transcription factor | 183 | 258 | - | - | |
Cmu05g2447 | 492 | Gene3D | WRKY domain | 185 | 258 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | Gene3D | WRKY domain | 363 | 439 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 147 | 209 | - | - | |
Cmu05g2447 | 492 | SMART | WRKY_cls | 198 | 256 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | SMART | WRKY_cls | 378 | 437 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 329 | 353 | - | - | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 147 | 196 | - | - | |
Cmu05g2447 | 492 | FunFam | WRKY transcription factor 33 | 365 | 431 | - | - | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmu05g2447 | 492 | ProSiteProfiles | WRKY domain profile. | 373 | 438 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 128 | 452 | IPR044810 | GO:0003700(InterPro) | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 296 | 363 | - | - | |
Cmu05g2447 | 492 | Pfam | WRKY DNA -binding domain | 379 | 436 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | Pfam | WRKY DNA -binding domain | 199 | 255 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 466 | 492 | - | - | |
Cmu05g2447 | 492 | ProSiteProfiles | WRKY domain profile. | 199 | 257 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cmu05g2447 | 492 | MobiDBLite | consensus disorder prediction | 263 | 282 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2447 | Cmu-Chr5:33516691 | Cmu10g1215 | Cmu-Chr10:4932714 | 2.10E-71 | dispersed | |
Cmu02g1914 | Cmu-Chr2:33060920 | Cmu05g2447 | Cmu-Chr5:33516691 | 2.20E-59 | transposed | |
Cmu03g0639 | Cmu-Chr3:623807 | Cmu05g2447 | Cmu-Chr5:33516691 | 5.50E-68 | transposed | |
Cmu06g1298 | Cmu-Chr6:24159030 | Cmu05g2447 | Cmu-Chr5:33516691 | 9.60E-43 | transposed | |
Cmu10g2952 | Cmu-Chr10:35773692 | Cmu05g2447 | Cmu-Chr5:33516691 | 2.00E-63 | transposed | |
Cmu11g0463 | Cmu-Chr11:5135642 | Cmu05g2447 | Cmu-Chr5:33516691 | 4.30E-120 | transposed | |
Cmu05g2447 | Cmu-Chr5:33516691 | Cmu08g0941 | Cmu-Chr8:21751417 | 2.60E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6275 | PF03106 | WRKY | 8.40E-26 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2447 | - | - | - | 0.0 |