Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2469 ATGGACCCTCTAACCAAAGAATATACTTCAACTCCAGCCCTTTTCCCTCCCTCAGAATTTCTATATATTGTCCCCTCAACTCTCCTTATTTCTCACTCCTCTGCTTCTTTCTGTTCCTTCATTTCTTACTTCTTTCCTTCTGGAATGGCTTCCGTCCTTATCTTTTTGGCAGGTTTCTATGCCATAGTTTCCTCTGTTGATGCTTATGCAGGTGGAGGCTGGACTGGGGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTATACAGCCAAGGATATGGAACAAACACTGCTGCTTTGAGTACGGCTCTATTCAACAATGGCTTGAGCTGTGGCTCTTGCTACGAGATTAGGTGCGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAACAATGCCCTTCCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTTCAACACTTTGATCTCTCTCAACCTGTATTCCAACACATTGCTCAGTACAGAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGAGGAGGCATAAGGTTCACCATCAATGGGCACTCCTACTTCAACTTAGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCAAGGAACTGGGGACAGAACTGGCAGAGTAACAGCTACCTCAATGGTCAAAGCCTCTCCTTCAAGGTAACCACCAGCGACGGCCGAACCGTCATCTCCAACAACGCTGTCCCAGCTGGCTGGTCCTTTGGACAGACTTACAATGGTGCCCAATTCTGA 891 49.38 MDPLTKEYTSTPALFPPSEFLYIVPSTLLISHSSASFCSFISYFFPSGMASVLIFLAGFYAIVSSVDAYAGGGWTGAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYRAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVISNNAVPAGWSFGQTYNGAQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33667992 33670874 + CmPI595203_05g024690.1 Cmu05g2469 417383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2469 296 SUPERFAMILY PHL pollen allergen 201 292 IPR036749 -
Cmu05g2469 296 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Cmu05g2469 296 Gene3D - 204 296 IPR036749 -
Cmu05g2469 296 FunFam Expansin 204 296 - -
Cmu05g2469 296 CDD DPBB_EXPA_N 73 199 - -
Cmu05g2469 296 FunFam Expansin 63 200 - -
Cmu05g2469 296 PRINTS Expansin signature 162 179 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 203 215 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 143 153 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 131 142 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 104 118 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 279 295 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 179 192 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin signature 250 271 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 92 204 IPR007112 -
Cmu05g2469 296 PANTHER EXPANSIN-A15 57 296 IPR002963 GO:0009664(InterPro)
Cmu05g2469 296 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576(InterPro)
Cmu05g2469 296 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576(InterPro)
Cmu05g2469 296 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576(InterPro)
Cmu05g2469 296 PRINTS Expansin/Lol pI family signature 73 88 IPR007118 GO:0005576(InterPro)
Cmu05g2469 296 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Cmu05g2469 296 PRINTS Expansin/Lol pI family signature 113 131 IPR007118 GO:0005576(InterPro)
Cmu05g2469 296 Pfam Lytic transglycolase 109 194 IPR009009 -
Cmu05g2469 296 Gene3D - 61 200 IPR036908 -
Cmu05g2469 296 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Cmu05g2469 296 SUPERFAMILY Barwin-like endoglucanases 73 222 IPR036908 -
Cmu05g2469 296 SMART dpbb_1 109 194 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0763 Cmu-Chr3:1825738 Cmu05g2469 Cmu-Chr5:33667992 7.80E-102 dispersed
Cmu05g2469 Cmu-Chr5:33667992 Cmu11g0574 Cmu-Chr11:6332320 5.60E-112 dispersed
Cmu08g1355 Cmu-Chr8:25766308 Cmu05g2469 Cmu-Chr5:33667992 4.90E-96 transposed
Cmu11g0982 Cmu-Chr11:15107540 Cmu05g2469 Cmu-Chr5:33667992 4.20E-121 transposed
Cmu04g1254 Cmu-Chr4:26999717 Cmu05g2469 Cmu-Chr5:33667992 2.60E-91 wgd
Cmu05g2469 Cmu-Chr5:33667992 Cmu06g1663 Cmu-Chr6:27751933 2.90E-116 wgd
Cmu05g2469 Cmu-Chr5:33667992 Cmu09g1739 Cmu-Chr9:33422439 3.10E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2469 - - - 0.0