Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2470 ATGGGAAGGGTAAAATTGAAGATTAAGAGATTGGAGAATACAAACGGACGCCAAGCAACTTATTCTAAAAGAAAGAACGGCATTATGAAGAAGGCTAAGGAATTATCTATTTTATGTGACATTGATATTATTCTTCTCATGTTTTCACCCACCGGAAAGCCTAATCTTTGTTGTGGCAAACGCAGCATTGAGGAGGTAATCGCTAGGTTTGCTCAACAAACTCCCCAGGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGATTCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATTCAAGATTTCCTAGGAACAAGTAGCCAAACGATTGAGGATCTGGCTGGCCAAGCAAAGTTATTGAGGACCCAACTTTCTGAAGTTCATCAGAGATTAAGCTATTGGAGCAACCCTGACAAGATAAACAATGTGGATCACTTGGCCCAAATGGAGGATTCGCTGAGAGAATCACTTAATCAAGTTCGATTGCATAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGGATGGAATGGATCTACCTTTCAATATGAGTGTTGAGCAACAACTTCAACAACTTCAACACTTCTCTTGGATTCCTAGTGATAATCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCTCCATCGGGATGTGGAGTGTTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTCCAAGTCCGGAGATTTCAAATCCTGGACAAGAAAATGGCGTCCTTCCTGAACTAAGCAGAACAGAACCTCTAAGGCCTCAACCAGGAGGGCAAAATTCCTACATGTCTTATAATGTTAACTTTTTTAATGACCCCAGATTTCAACCTGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATCATGTTAATGGGAATTTTGACACCACCCAACATAATTGGGCTTCTGCTTCTGGCCCTTGTGCCTATAGTAATTCTGGAACAGTTGATCGCGTACCTGATAGCTTGAGGATGATTTTGAACTATGTTCAACTCTTGTCTCGTTCAAGTTCATCTATACCAAGCAACTATAGCATACAGCAAGAAGCCGATAGCACACACACTATTTCAGAATTACCCTCTAGAGGCGGCTGTCACCGGGCAAAGGAGGCTCGGTGCTTACTCTCCATGAAATGA 1197 42.02 MGRVKLKIKRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPNLCCGKRSIEEVIARFAQQTPQERAKRKMESLDSLRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWSNPDKINNVDHLAQMEDSLRESLNQVRLHKENLQKHPPVPLEFTNQDGMDLPFNMSVEQQLQQLQHFSWIPSDNQNIVLHDDPNFVLHRDVECSASSSFASYPGYFGTGPSPEISNPGQENGVLPELSRTEPLRPQPGGQNSYMSYNVNFFNDPRFQPAAEMNLPVNPVDYHVNGNFDTTQHNWASASGPCAYSNSGTVDRVPDSLRMILNYVQLLSRSSSSIPSNYSIQQEADSTHTISELPSRGGCHRAKEARCLLSMK 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33672133 33675791 - CmPI595203_05g024700.1 Cmu05g2470 417384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2470 398 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Cmu05g2470 398 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 Coils Coil 149 169 - -
Cmu05g2470 398 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cmu05g2470 398 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2470 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2470 Cmu-Chr5:33672133 Cmu11g1595 Cmu-Chr11:28268144 1.90E-14 dispersed
Cmu07g0942 Cmu-Chr7:23680861 Cmu05g2470 Cmu-Chr5:33672133 4.10E-14 transposed
Cmu04g1256 Cmu-Chr4:27004751 Cmu05g2470 Cmu-Chr5:33672133 1.20E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
Cmu05g2470 . 1 315 Type I MADS-box Gene Family AT2G03060 52.8 3.2e-91 332.4
Cmu10g1783 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cmu03g2370 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 6.8e-55 211.5
Cmu01g1002 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cmu07g0942 . 17 168 Type I MADS-box Gene Family AT1G77950 56.4 1.5e-41 166.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006439 2 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6278 PF00319 SRF-TF 2.70E-19 No_clan Cmu TF