Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2470 | ATGGGAAGGGTAAAATTGAAGATTAAGAGATTGGAGAATACAAACGGACGCCAAGCAACTTATTCTAAAAGAAAGAACGGCATTATGAAGAAGGCTAAGGAATTATCTATTTTATGTGACATTGATATTATTCTTCTCATGTTTTCACCCACCGGAAAGCCTAATCTTTGTTGTGGCAAACGCAGCATTGAGGAGGTAATCGCTAGGTTTGCTCAACAAACTCCCCAGGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGATTCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATTCAAGATTTCCTAGGAACAAGTAGCCAAACGATTGAGGATCTGGCTGGCCAAGCAAAGTTATTGAGGACCCAACTTTCTGAAGTTCATCAGAGATTAAGCTATTGGAGCAACCCTGACAAGATAAACAATGTGGATCACTTGGCCCAAATGGAGGATTCGCTGAGAGAATCACTTAATCAAGTTCGATTGCATAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGGATGGAATGGATCTACCTTTCAATATGAGTGTTGAGCAACAACTTCAACAACTTCAACACTTCTCTTGGATTCCTAGTGATAATCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCTCCATCGGGATGTGGAGTGTTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTCCAAGTCCGGAGATTTCAAATCCTGGACAAGAAAATGGCGTCCTTCCTGAACTAAGCAGAACAGAACCTCTAAGGCCTCAACCAGGAGGGCAAAATTCCTACATGTCTTATAATGTTAACTTTTTTAATGACCCCAGATTTCAACCTGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATCATGTTAATGGGAATTTTGACACCACCCAACATAATTGGGCTTCTGCTTCTGGCCCTTGTGCCTATAGTAATTCTGGAACAGTTGATCGCGTACCTGATAGCTTGAGGATGATTTTGAACTATGTTCAACTCTTGTCTCGTTCAAGTTCATCTATACCAAGCAACTATAGCATACAGCAAGAAGCCGATAGCACACACACTATTTCAGAATTACCCTCTAGAGGCGGCTGTCACCGGGCAAAGGAGGCTCGGTGCTTACTCTCCATGAAATGA | 1197 | 42.02 | MGRVKLKIKRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPNLCCGKRSIEEVIARFAQQTPQERAKRKMESLDSLRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWSNPDKINNVDHLAQMEDSLRESLNQVRLHKENLQKHPPVPLEFTNQDGMDLPFNMSVEQQLQQLQHFSWIPSDNQNIVLHDDPNFVLHRDVECSASSSFASYPGYFGTGPSPEISNPGQENGVLPELSRTEPLRPQPGGQNSYMSYNVNFFNDPRFQPAAEMNLPVNPVDYHVNGNFDTTQHNWASASGPCAYSNSGTVDRVPDSLRMILNYVQLLSRSSSSIPSNYSIQQEADSTHTISELPSRGGCHRAKEARCLLSMK | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33672133 | 33675791 | - | CmPI595203_05g024700.1 | Cmu05g2470 | 417384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2470 | 398 | Gene3D | - | 14 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | FunFam | Agamous-like MADS-box protein AGL30 | 14 | 95 | - | - | |
Cmu05g2470 | 398 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | Coils | Coil | 149 | 169 | - | - | |
Cmu05g2470 | 398 | SUPERFAMILY | SRF-like | 2 | 94 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | CDD | MADS_SRF_like | 2 | 83 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
Cmu05g2470 | 398 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 54 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cmu05g2470 | 398 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 213 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2470 | Cmu-Chr5:33672133 | Cmu11g1595 | Cmu-Chr11:28268144 | 1.90E-14 | dispersed | |
Cmu07g0942 | Cmu-Chr7:23680861 | Cmu05g2470 | Cmu-Chr5:33672133 | 4.10E-14 | transposed | |
Cmu04g1256 | Cmu-Chr4:27004751 | Cmu05g2470 | Cmu-Chr5:33672133 | 1.20E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6278 | PF00319 | SRF-TF | 2.70E-19 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2470 | - | - | - | 0.0 |