Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2470 ATGGGAAGGGTAAAATTGAAGATTAAGAGATTGGAGAATACAAACGGACGCCAAGCAACTTATTCTAAAAGAAAGAACGGCATTATGAAGAAGGCTAAGGAATTATCTATTTTATGTGACATTGATATTATTCTTCTCATGTTTTCACCCACCGGAAAGCCTAATCTTTGTTGTGGCAAACGCAGCATTGAGGAGGTAATCGCTAGGTTTGCTCAACAAACTCCCCAGGAAAGGGCAAAAAGGAAAATGGAAAGCCTTGATTCACTGCGGAAAACTTTCAAGAAATTGGACCACGATGTCAACATTCAAGATTTCCTAGGAACAAGTAGCCAAACGATTGAGGATCTGGCTGGCCAAGCAAAGTTATTGAGGACCCAACTTTCTGAAGTTCATCAGAGATTAAGCTATTGGAGCAACCCTGACAAGATAAACAATGTGGATCACTTGGCCCAAATGGAGGATTCGCTGAGAGAATCACTTAATCAAGTTCGATTGCATAAGGAAAATCTGCAGAAGCATCCTCCAGTACCATTAGAGTTCACTAATCAGGATGGAATGGATCTACCTTTCAATATGAGTGTTGAGCAACAACTTCAACAACTTCAACACTTCTCTTGGATTCCTAGTGATAATCAAAATATAGTTTTACACGACGATCCAAACTTCGTTCTCCATCGGGATGTGGAGTGTTCTGCAAGTTCCTCCTTTGCTAGTTACCCTGGTTATTTCGGCACGGGTCCAAGTCCGGAGATTTCAAATCCTGGACAAGAAAATGGCGTCCTTCCTGAACTAAGCAGAACAGAACCTCTAAGGCCTCAACCAGGAGGGCAAAATTCCTACATGTCTTATAATGTTAACTTTTTTAATGACCCCAGATTTCAACCTGCAGCAGAGATGAACCTGCCAGTAAATCCTGTAGATTATCATGTTAATGGGAATTTTGACACCACCCAACATAATTGGGCTTCTGCTTCTGGCCCTTGTGCCTATAGTAATTCTGGAACAGTTGATCGCGTACCTGATAGCTTGAGGATGATTTTGAACTATGTTCAACTCTTGTCTCGTTCAAGTTCATCTATACCAAGCAACTATAGCATACAGCAAGAAGCCGATAGCACACACACTATTTCAGAATTACCCTCTAGAGGCGGCTGTCACCGGGCAAAGGAGGCTCGGTGCTTACTCTCCATGAAATGA 1197 42.02 MGRVKLKIKRLENTNGRQATYSKRKNGIMKKAKELSILCDIDIILLMFSPTGKPNLCCGKRSIEEVIARFAQQTPQERAKRKMESLDSLRKTFKKLDHDVNIQDFLGTSSQTIEDLAGQAKLLRTQLSEVHQRLSYWSNPDKINNVDHLAQMEDSLRESLNQVRLHKENLQKHPPVPLEFTNQDGMDLPFNMSVEQQLQQLQHFSWIPSDNQNIVLHDDPNFVLHRDVECSASSSFASYPGYFGTGPSPEISNPGQENGVLPELSRTEPLRPQPGGQNSYMSYNVNFFNDPRFQPAAEMNLPVNPVDYHVNGNFDTTQHNWASASGPCAYSNSGTVDRVPDSLRMILNYVQLLSRSSSSIPSNYSIQQEADSTHTISELPSRGGCHRAKEARCLLSMK 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33672133 33675791 - CmPI595203_05g024700.1 Cmu05g2470 417384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2470 398 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 FunFam Agamous-like MADS-box protein AGL30 14 95 - -
Cmu05g2470 398 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 Coils Coil 149 169 - -
Cmu05g2470 398 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cmu05g2470 398 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu05g2470 398 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2470 Cmu-Chr5:33672133 Cmu11g1595 Cmu-Chr11:28268144 1.90E-14 dispersed
Cmu07g0942 Cmu-Chr7:23680861 Cmu05g2470 Cmu-Chr5:33672133 4.10E-14 transposed
Cmu04g1256 Cmu-Chr4:27004751 Cmu05g2470 Cmu-Chr5:33672133 1.20E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6278 PF00319 SRF-TF 2.70E-19 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2470 - - - 0.0