Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2486 | ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATCGCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTCCTCAGAGTAGCGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG | 639 | 52.58 | MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPSSPIPLPIAHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRAPQSSEQNGGNDSKQST | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33738344 | 33738982 | + | CmPI595203_05g024860.1 | Cmu05g2486 | 417400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2486 | 212 | SUPERFAMILY | Homeodomain-like | 121 | 186 | IPR009057 | - | |
Cmu05g2486 | 212 | NCBIfam | homeobox domain, ZF-HD class | 128 | 185 | IPR006455 | - | |
Cmu05g2486 | 212 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 3 | 184 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cmu05g2486 | 212 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 5 | 56 | IPR006456 | - | |
Cmu05g2486 | 212 | MobiDBLite | consensus disorder prediction | 186 | 212 | - | - | |
Cmu05g2486 | 212 | MobiDBLite | consensus disorder prediction | 117 | 141 | - | - | |
Cmu05g2486 | 212 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 5 | 56 | IPR006456 | - | |
Cmu05g2486 | 212 | Pfam | ZF-HD protein dimerisation region | 3 | 57 | IPR006456 | - | |
Cmu05g2486 | 212 | Gene3D | - | 115 | 188 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2486 | Cmu-Chr5:33738344 | Cmu11g0008 | Cmu-Chr11:481676 | 1.80E-32 | dispersed | |
Cmu10g2256 | Cmu-Chr10:28737137 | Cmu05g2486 | Cmu-Chr5:33738344 | 5.00E-44 | wgd | |
Cmu04g1264 | Cmu-Chr4:27077320 | Cmu05g2486 | Cmu-Chr5:33738344 | 7.10E-14 | wgd | |
Cmu05g2486 | Cmu-Chr5:33738344 | Cmu06g1674 | Cmu-Chr6:27811526 | 4.60E-15 | wgd | |
Cmu05g2486 | Cmu-Chr5:33738344 | Cmu09g1750 | Cmu-Chr9:33520914 | 1.20E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6282 | PF04770 | ZF-HD_dimer | 8.20E-29 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2486 | - | - | - | 0.0 |