Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2486 ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATCGCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTCCTCAGAGTAGCGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 639 52.58 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPSSPIPLPIAHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRAPQSSEQNGGNDSKQST 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33738344 33738982 + CmPI595203_05g024860.1 Cmu05g2486 417400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2486 212 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Cmu05g2486 212 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Cmu05g2486 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 184 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu05g2486 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cmu05g2486 212 MobiDBLite consensus disorder prediction 186 212 - -
Cmu05g2486 212 MobiDBLite consensus disorder prediction 117 141 - -
Cmu05g2486 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Cmu05g2486 212 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Cmu05g2486 212 Gene3D - 115 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2486 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2486 Cmu-Chr5:33738344 Cmu11g0008 Cmu-Chr11:481676 1.80E-32 dispersed
Cmu10g2256 Cmu-Chr10:28737137 Cmu05g2486 Cmu-Chr5:33738344 5.00E-44 wgd
Cmu04g1264 Cmu-Chr4:27077320 Cmu05g2486 Cmu-Chr5:33738344 7.10E-14 wgd
Cmu05g2486 Cmu-Chr5:33738344 Cmu06g1674 Cmu-Chr6:27811526 4.60E-15 wgd
Cmu05g2486 Cmu-Chr5:33738344 Cmu09g1750 Cmu-Chr9:33520914 1.20E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1086 . 55 246 ZF-HD Transcription Factor Family AT5G65410 50.7 1.2e-44 177.2
Cmu08g1086 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 2.4e-49 192.6
Cmu01g1793 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Cmu10g1661 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 4.1e-41 165.2
Cmu11g0008 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Cmu11g0008 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.2 5.1e-55 211.8
Cmu01g1894 . 128 334 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cmu10g2256 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.9e-51 198.7
Cmu09g1750 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.1e-51 198.4
Cmu10g2256 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cmu09g1750 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.9e-58 222.6
Cmu09g1750 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cmu10g2256 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cmu05g2486 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 8.0e-48 187.6
Cmu09g1750 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cmu11g0008 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Cmu08g1086 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 2.4e-49 192.6
Cmu01g1793 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Cmu10g1661 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 4.1e-41 165.2
Cmu09g1750 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cmu10g2256 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cmu01g1894 . 128 334 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cmu08g1086 . 55 246 ZF-HD Transcription Factor Family AT5G65410 50.7 1.2e-44 177.2
Cmu05g2486 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 8.0e-48 187.6
Cmu09g1750 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cmu10g2256 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.9e-51 198.7
Cmu09g1750 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.1e-51 198.4
Cmu11g0008 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.2 5.1e-55 211.8
Cmu10g2256 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cmu09g1750 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.9e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013584 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6282 PF04770 ZF-HD_dimer 8.20E-29 No_clan Cmu TF