Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2486 ATGGTCATCTCTTACAGAGAATGCCTAAAGAATCACGCCGCCACTGTCGGTGGCCACGCCCTCGACGGTTGCGGCGAGTTTATGCCCTCCGTTACCTCCACACCCGCCGATCCCACTTCGCTAAATTGCGCCGCCTGTGGTTGCCATCGTAACTTCCACCGCCGTGAACCGGACGATCCTTGGCCCAACCGTCGTTACTACCCATATCGCCTCTGTGCACCGCCGTCCCCGAGGTCGAGCCCAGTCAAATCGCAAAGCCCATCCTCGCCGATCCCTCTACCAATCGCCCATATCCCACCGCCAGTCCAGTTCTCCGGCCCGCATATGTTGGTGGCATTGAGCACCGGAGCGCCGGCGGAGGAGGAATTGAGGAGAAAACAGAGGAAGAGAAAGAGGACGAAATTCAGCGGGGAGCAGAAGGAAAAGATGCAATTATTCTCAGAGAAAATTGGATGGAAAATTGGGAAAAGTGAGGAAAGGTTAGTGGAGGAATTCTGCAAAGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGGAAAACAACACAGAAAAACAGAGCTCCTCAGAGTAGCGAACAAAATGGTGGAAATGACTCAAAACAGAGCACATAG 639 52.58 MVISYRECLKNHAATVGGHALDGCGEFMPSVTSTPADPTSLNCAACGCHRNFHRREPDDPWPNRRYYPYRLCAPPSPRSSPVKSQSPSSPIPLPIAHIPPPVQFSGPHMLVALSTGAPAEEELRRKQRKRKRTKFSGEQKEKMQLFSEKIGWKIGKSEERLVEEFCKEIGIGKRVLRVWMHNNKYMGGKTTQKNRAPQSSEQNGGNDSKQST 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33738344 33738982 + CmPI595203_05g024860.1 Cmu05g2486 417400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2486 212 SUPERFAMILY Homeodomain-like 121 186 IPR009057 -
Cmu05g2486 212 NCBIfam homeobox domain, ZF-HD class 128 185 IPR006455 -
Cmu05g2486 212 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 184 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu05g2486 212 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cmu05g2486 212 MobiDBLite consensus disorder prediction 186 212 - -
Cmu05g2486 212 MobiDBLite consensus disorder prediction 117 141 - -
Cmu05g2486 212 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Cmu05g2486 212 Pfam ZF-HD protein dimerisation region 3 57 IPR006456 -
Cmu05g2486 212 Gene3D - 115 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2486 Cmu-Chr5:33738344 Cmu11g0008 Cmu-Chr11:481676 1.80E-32 dispersed
Cmu10g2256 Cmu-Chr10:28737137 Cmu05g2486 Cmu-Chr5:33738344 5.00E-44 wgd
Cmu04g1264 Cmu-Chr4:27077320 Cmu05g2486 Cmu-Chr5:33738344 7.10E-14 wgd
Cmu05g2486 Cmu-Chr5:33738344 Cmu06g1674 Cmu-Chr6:27811526 4.60E-15 wgd
Cmu05g2486 Cmu-Chr5:33738344 Cmu09g1750 Cmu-Chr9:33520914 1.20E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6282 PF04770 ZF-HD_dimer 8.20E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2486 - - - 0.0