Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2488 ATGGAAGAGAAACAAAGCGATGTGGTGTTGTTTGGAACGTGGTATAGTTCATACTGCACTAGAATTGTGCTAGCACTAAAAATCAAAGGCATAAACTTTGAGTATGTGGAAGAAGATTTAGCAAATAAGAGTGAATTGCTTCTCCAGTACAATCCAGTTCATCAAAAAGTCCCAGTACTCGTCCATAAAGGAAGGCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGAAAATTGGAACTACCATCCCAAAATTCTACCTGATCACCCATATGAAAGAGCCAAAGTTCGCTTCTGGGCGCAATTCTATGATCAAAAGATTCTATTAGGCGCCTTGCCCATCCTCAAATCCAAAGGAGAAGAAAGAGAGAGAGCTGTTGAGGAGCAATCAAAAATGATAAGGGTGTTTGAAGAAGGAATGAAGAAAGATTTTCCTGGAAAATTTCCCTTTTACCAAGGGAGAAACTTGGGACTTCTTGATATAGTTGTAGGGCCTAATGCTTGCAACTATTTGGCATTGCGCGAGGTTGTTGGAGATGTAATTGACTCAAAAAGAAACCCTGATTTTTTCTCATGGGTGGATGCTTTGAAGGGACATCCTCTGATTAAGGAAACGCTTCCTCCTCACCATAAAATGGTACACAAACTGAAAGAGAAGATCCATATAAAGCCTAAAGATAGCTAA 690 39.57 MEEKQSDVVLFGTWYSSYCTRIVLALKIKGINFEYVEEDLANKSELLLQYNPVHQKVPVLVHKGRPIAESFVILEYIEENWNYHPKILPDHPYERAKVRFWAQFYDQKILLGALPILKSKGEERERAVEEQSKMIRVFEEGMKKDFPGKFPFYQGRNLGLLDIVVGPNACNYLALREVVGDVIDSKRNPDFFSWVDALKGHPLIKETLPPHHKMVHKLKEKIHIKPKDS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33746061 33746855 - CmPI595203_05g024880.1 Cmu05g2488 417402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2488 229 CDD GST_N_Tau 8 81 - -
Cmu05g2488 229 Gene3D - 88 227 - -
Cmu05g2488 229 CDD GST_C_Tau 92 215 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cmu05g2488 229 Pfam Glutathione S-transferase, N-terminal domain 8 79 IPR004045 -
Cmu05g2488 229 SUPERFAMILY GST C-terminal domain-like 80 220 IPR036282 -
Cmu05g2488 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 222 IPR010987 -
Cmu05g2488 229 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
Cmu05g2488 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Cmu05g2488 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 219 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cmu05g2488 229 Gene3D Glutaredoxin 1 87 - -
Cmu05g2488 229 SFLD Main.3: Omega- and Tau-like 4 221 IPR045073 -
Cmu05g2488 229 FunFam Tau class glutathione S-transferase 1 89 - -
Cmu05g2488 229 SFLD Glutathione Transferase (cytosolic) 4 221 IPR040079 -
Cmu05g2488 229 SUPERFAMILY Thioredoxin-like 7 109 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2488 K00799 - - vvi:100260235 298.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1270 Cmu-Chr4:27119337 Cmu05g2488 Cmu-Chr5:33746061 7.00E-49 dispersed
Cmu04g1271 Cmu-Chr4:27127783 Cmu05g2488 Cmu-Chr5:33746061 1.30E-45 dispersed
Cmu05g2488 Cmu-Chr5:33746061 Cmu07g1049 Cmu-Chr7:25356052 6.60E-36 dispersed
Cmu01g0823 Cmu-Chr1:9648931 Cmu05g2488 Cmu-Chr5:33746061 1.60E-31 transposed
Cmu05g0272 Cmu-Chr5:2315138 Cmu05g2488 Cmu-Chr5:33746061 1.50E-45 transposed
Cmu06g1506 Cmu-Chr6:26332020 Cmu05g2488 Cmu-Chr5:33746061 5.60E-43 transposed
Cmu04g1268 Cmu-Chr4:27116395 Cmu05g2488 Cmu-Chr5:33746061 2.70E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28