Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2494 | ATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACCGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGGTCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCAAATAATCCTGATCAATCATAG | 1065 | 49.86 | MDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 33792540 | 33793604 | + | CmPI595203_05g024940.1 | Cmu05g2494 | 417408 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2494 | 354 | Pfam | TCP family transcription factor | 66 | 179 | IPR017887 | - | |
Cmu05g2494 | 354 | MobiDBLite | consensus disorder prediction | 210 | 240 | - | - | |
Cmu05g2494 | 354 | ProSiteProfiles | TCP domain profile. | 67 | 121 | IPR017887 | - | |
Cmu05g2494 | 354 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
Cmu05g2494 | 354 | MobiDBLite | consensus disorder prediction | 222 | 240 | - | - | |
Cmu05g2494 | 354 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 38 | 322 | IPR005333 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cmu05g2494 | 354 | MobiDBLite | consensus disorder prediction | 26 | 61 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2494 | Cmu-Chr5:33792540 | Cmu06g0017 | Cmu-Chr6:203085 | 2.30E-27 | dispersed | |
Cmu11g1349 | Cmu-Chr11:25694987 | Cmu05g2494 | Cmu-Chr5:33792540 | 9.30E-38 | transposed | |
Cmu04g1279 | Cmu-Chr4:27166591 | Cmu05g2494 | Cmu-Chr5:33792540 | 4.80E-44 | wgd | |
Cmu05g2494 | Cmu-Chr5:33792540 | Cmu06g1677 | Cmu-Chr6:27850054 | 4.50E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6284 | PF03634 | TCP | 3.90E-38 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2494 | - | - | - | 0.0 |