Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2494 ATGGATGGTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCCTCCGCAAACAACGGAGGAACAACAACGACGACAATAACAACAACAACTCCAAATCCAAATCTTCAATCTTCTTCTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGTATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGCCACAAGTCCGATGGCGAAACAATTGAGTGGCTTCTACAACAAGCTGAGCCTGCCGTTATTGCTGCAACCGGTACTGGTACCATTCCAGCTAATTTCACTTCTCTTAATATCTCCCTCCGTAGCTCCGGCTCCACCATTTCCGCTCCTTCTCATCTTCGGACGAGCTATTTTAGTCCCACGCAATTCGCCGTCAGAACAAGATCCGATCTTTGGGACAGAAACAACAATCATAATCATAATCTCGTGGATGATTCCTCTACGTTCTTGAATTTCAACGCTCCTAATTATGTGAACGTGTTCAAGCAAGATCAAGGTGGGATTGACGTCACCGAGGCGGGAAAGAAACGGCGGTCGGAGCAGTCAGAATCATCGTCGGATAATTATTTGGTTCAAACGAGTACCGGGTCAATTCCAGCGAGTCAAAGCAGTCCATTGCCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCGGGGGCGGGTGGTGGCGGCGGCGGCGGCGGCGGGGGATTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGACAACAGTTGGGGACAGGAATCGGCAGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCTGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCCAACATCAAATAATCCTGATCAATCATAG 1065 49.86 MDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTTITTTTPNPNLQSSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNAPNYVNVFKQDQGGIDVTEAGKKRRSEQSESSSDNYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGGGGGFHFMNLPPPMALLPSGQQLGTGIGSGGGPATESHLGMLAALSAYRTTMPGLSVSESPTSNNPDQS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33792540 33793604 + CmPI595203_05g024940.1 Cmu05g2494 417408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2494 354 Pfam TCP family transcription factor 66 179 IPR017887 -
Cmu05g2494 354 MobiDBLite consensus disorder prediction 210 240 - -
Cmu05g2494 354 ProSiteProfiles TCP domain profile. 67 121 IPR017887 -
Cmu05g2494 354 MobiDBLite consensus disorder prediction 1 80 - -
Cmu05g2494 354 MobiDBLite consensus disorder prediction 222 240 - -
Cmu05g2494 354 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 322 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu05g2494 354 MobiDBLite consensus disorder prediction 26 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2494 Cmu-Chr5:33792540 Cmu06g0017 Cmu-Chr6:203085 2.30E-27 dispersed
Cmu11g1349 Cmu-Chr11:25694987 Cmu05g2494 Cmu-Chr5:33792540 9.30E-38 transposed
Cmu04g1279 Cmu-Chr4:27166591 Cmu05g2494 Cmu-Chr5:33792540 4.80E-44 wgd
Cmu05g2494 Cmu-Chr5:33792540 Cmu06g1677 Cmu-Chr6:27850054 4.50E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6284 PF03634 TCP 3.90E-38 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2494 - - - 0.0