Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2502 ATGAATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTTGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCCTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTTTGGAGTAGGCCTTCCGATCACCATGAAGAAGACAATACTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAGCGCAGTGACCATGGCCCAAGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGATGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCTGCTGCCGCTGCTGATACCGTGGTGAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGCAGGCAATAGCTCTCTGCAAGTTACAGGGCAGGGGGAAGAACATGGATCCACCCCATTCCAATGGGGCAGTGCAAAGCTTCCAACTCATATGGCATGTGATGCAGCTGAGAATCCTTTGTCTCTGCCCAATTTCTTTTTTCAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAAATGATGATGGGAAAGAGGTTGGTCCTGGTGCACGATACCCTGTTGGTGGGACAAGATTCCGGCCGCAGACGGCGGCGATTGCAGCTCCGGCCACCATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCTCCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAACTTGAACCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTGCAGCCAAGACAAATTGCTATTTGGTTTCAAAACAGAAGAGCTCGCTGGAAAACCAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAATTAGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCATCAACATCCAACAAATAGGCCTCTTTTTCCCACTTCTTCCTTAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACCTCTTCAAGATCATCAGATCATCCACCAAAGCAACTTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 1788 44.18 MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSDHHEEDNTASAQRSQFISSAGSAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLAGNSSLQVTGQGEEHGSTPFQWGSAKLPTHMACDAAENPLSLPNFFFQERKERKKERKKNDDGKEVGPGARYPVGGTRFRPQTAAIAAPATMTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDHPPKQLDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33870270 33882612 + CmPI595203_05g025020.1 Cmu05g2502 417416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2502 595 CDD homeodomain 381 437 IPR001356 GO:0003677(InterPro)
Cmu05g2502 595 Pfam Homeodomain 381 434 IPR001356 GO:0003677(InterPro)
Cmu05g2502 595 MobiDBLite consensus disorder prediction 513 553 - -
Cmu05g2502 595 ProSitePatterns 'Homeobox' domain signature. 411 434 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu05g2502 595 MobiDBLite consensus disorder prediction 484 506 - -
Cmu05g2502 595 SMART rrm1_1 7 77 IPR000504 GO:0003723(InterPro)
Cmu05g2502 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723(InterPro)
Cmu05g2502 595 FunFam Homeobox-leucine zipper protein ATHB-13 373 440 - -
Cmu05g2502 595 ProSiteProfiles 'Homeobox' domain profile. 376 436 IPR001356 GO:0003677(InterPro)
Cmu05g2502 595 SMART HOX_1 379 440 IPR001356 GO:0003677(InterPro)
Cmu05g2502 595 SUPERFAMILY RNA-binding domain, RBD 5 77 IPR035979 GO:0003676(InterPro)
Cmu05g2502 595 MobiDBLite consensus disorder prediction 254 281 - -
Cmu05g2502 595 CDD RRM_Vip1_like 8 76 IPR034360 -
Cmu05g2502 595 Gene3D - 373 442 - -
Cmu05g2502 595 MobiDBLite consensus disorder prediction 254 270 - -
Cmu05g2502 595 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 359 576 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cmu05g2502 595 SUPERFAMILY Homeodomain-like 371 438 IPR009057 -
Cmu05g2502 595 PRINTS Lambda-repressor HTH signature 407 416 IPR000047 GO:0003677(InterPro)
Cmu05g2502 595 PRINTS Lambda-repressor HTH signature 416 432 IPR000047 GO:0003677(InterPro)
Cmu05g2502 595 Pfam RNA recognition motif 10 70 IPR000504 GO:0003723(InterPro)
Cmu05g2502 595 MobiDBLite consensus disorder prediction 477 575 - -
Cmu05g2502 595 Gene3D - 5 76 IPR012677 -
Cmu05g2502 595 MobiDBLite consensus disorder prediction 362 381 - -
Cmu05g2502 595 Pfam Homeobox associated leucine zipper 436 476 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g2502 595 Coils Coil 428 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2502 Cmu-Chr5:33870270 Cmu09g1761 Cmu-Chr9:33740479 1.10E-50 dispersed
Cmu09g1644 Cmu-Chr9:31733264 Cmu05g2502 Cmu-Chr5:33870270 2.20E-25 transposed
Cmu05g2502 Cmu-Chr5:33870270 Cmu09g1759 Cmu-Chr9:33702462 1.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6286 PF00076 RRM_1 4.00E-05 CL0221 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2502 K09338 - csv:101221595 565.844