Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2507 ATGTCCATCCTTAGTGCTTCTCCACGCAAACCATTCAATAGAAACTCAGAAATCATTGCATTTACAGATGCCAAGTTTCTGTGGGGCATTTCGTCGAACGCCTTTAGGCTGTTGCTCCATAGACAGAGGCAGGAAAATGGAACTGTTAGAACGAAGGGAGGCCGGGCGAGTGGCTCTACTTTGGATTTTCCCTTTGCTCTTTCTGCTCCTGATCGTGTTCTCGTCACCGGGGAAGTCCCTCTCGTTAAGCCGGTAGAGAAATTGAAATTGAGGTTTCTCTTTGATTTAGTTTCTCAATCCATCAACATCAGTAAAGGCTCTCGCCGCGCTAGGTTACAGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGAGATTTCAAGAGGTTGCAGCAAGATCCACCTGCTGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGGCCAGATGATACACCATGGGATGGAGGTACGTTTAAGCTTACTCTTCAGTTTACTGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGCTGCTGTGTGATCCCAATCCAAACTCTCCGGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAATAAGCGTGAGTACAACAGGAGAGGACATGAGAATGTTGTATCGTTTCCTCAGATGCCAGGGCGACAATGTGGACGTGCTCAAGAATGGACCAAAGGCCGATGCCTCAGATTGGCTGCTCTTCCACGTGCTGCGAAGCGGAGAAAGGAATCGGGATTTTCTTTTGAATTCGTTTCTGAATCCATCGAGATCAGCCAAAGTTCTCGGCTCGCCGCGCTAGGTTACGGTTTAGGGCAGAGATCCAGGGGTTTTGTTTACGGCGTGGGTACGGGAAAGGATGTATCGACGTGCAACGAGCTGGTGTTTAGTTTCGTTAAGGCATGGCCGGTGAGGATGTCTACTCCTGCAAGGAAGAGACTGATGAGGGACTTTAAGAGGTTGCAACAAGATCCACCTGCCGGTATCAGTGGTGCTCCCCAAGACAATAATATCATGCTTTGGAATGCTGTTATATTTGGGCCAGATGATACACCTTGGGATGGAGGTACGTTTAAGCTGACCCTGCAGTTCACCGAGGATTATCCAAATAAGCCACCGACAGTCCGCTTTGTGTCTAGAATGTTCCACCCCAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAATGGAGCCCAATCTATGATGTAGCAGCTATACTTACCTCTATTCAGTCGTTGCTGTGCGACCCCAATCCAAATTCTCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGCGAGAACAAGCGTGAGTACAACAGGAGAGTACGCGAGATCGTGGAACAGAGTTGGACTGCTGATTAG 1536 47.07 MSILSASPRKPFNRNSEIIAFTDAKFLWGISSNAFRLLLHRQRQENGTVRTKGGRASGSTLDFPFALSAPDRVLVTGEVPLVKPVEKLKLRFLFDLVSQSINISKGSRRARLQPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRGHENVVSFPQMPGRQCGRAQEWTKGRCLRLAALPRAAKRRKESGFSFEFVSESIEISQSSRLAALGYGLGQRSRGFVYGVGTGKDVSTCNELVFSFVKAWPVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33931035 33943742 - CmPI595203_05g025070.1 Cmu05g2507 417421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2507 511 FunFam Ubiquitin-conjugating enzyme E2 2 360 507 - -
Cmu05g2507 511 FunFam Ubiquitin-conjugating enzyme E2 2 117 263 - -
Cmu05g2507 511 CDD UBCc 366 504 IPR000608 -
Cmu05g2507 511 Gene3D Ubiquitin Conjugating Enzyme 358 507 IPR016135 -
Cmu05g2507 511 SMART ubc_7 366 509 - -
Cmu05g2507 511 SMART ubc_7 123 266 - -
Cmu05g2507 511 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 363 509 IPR000608 -
Cmu05g2507 511 Gene3D Ubiquitin Conjugating Enzyme 94 285 IPR016135 -
Cmu05g2507 511 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 361 509 IPR050113 GO:0000209(PANTHER)|GO:0006281(PANTHER)|GO:0016574(PANTHER)|GO:0043161(PANTHER)|GO:0061631(PANTHER)
Cmu05g2507 511 SUPERFAMILY UBC-like 357 509 IPR016135 -
Cmu05g2507 511 Pfam Ubiquitin-conjugating enzyme 367 503 IPR000608 -
Cmu05g2507 511 Pfam Ubiquitin-conjugating enzyme 124 257 IPR000608 -
Cmu05g2507 511 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 436 451 IPR023313 -
Cmu05g2507 511 CDD UBCc 123 259 IPR000608 -
Cmu05g2507 511 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 120 266 IPR000608 -
Cmu05g2507 511 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 193 208 IPR023313 -
Cmu05g2507 511 SUPERFAMILY UBC-like 110 259 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2507 K10573 - - csv:101222773 320.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0812 Cmu-Chr2:9373070 Cmu05g2507 Cmu-Chr5:33931035 2.70E-29 dispersed
Cmu03g0786 Cmu-Chr3:2048984 Cmu05g2507 Cmu-Chr5:33931035 1.00E-25 dispersed
Cmu05g2148 Cmu-Chr5:30942584 Cmu05g2507 Cmu-Chr5:33931035 4.60E-27 dispersed
Cmu05g2507 Cmu-Chr5:33931035 Cmu01g0201 Cmu-Chr1:1971034 6.20E-34 dispersed
Cmu10g2585 Cmu-Chr10:32654233 Cmu05g2507 Cmu-Chr5:33931035 3.50E-06 dispersed
Cmu05g2507 Cmu-Chr5:33931035 Cmu05g0971 Cmu-Chr5:8844842 1.20E-34 transposed
Cmu05g2507 Cmu-Chr5:33931035 Cmu01g0064 Cmu-Chr1:528146 1.20E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71