Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2509 ATGGCTATGCACCGGCTACTGCTAACATTGTCCTTGCTGGCAACTACCGCATTTGCTGACATTGGAAACTTTGATGACTACTGGAAAGCACGTGCCGTGGACGCCGAACAAGCCGCCGCCGCCGCCTTTGAGCCTAATCCTGAAACCGTCACCAACTCCTTCAATGCCGAAGTAGGCCAGTTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGGCCATGTCGAGCTACTAATCCCATCGATCGGTGCTGGAGATGCGACCCCAATTGGGCCAAGAACCGGAAGAAGCTAGCTGATTGTGTTCTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAACGACTCGTCAGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACGCAGGAGCTCATCATGACCAGCGACAAGACCATTGATGCAAGAGGGGCTAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTTGTCGGTTCTGGCGGAATGATTAGAGACGCTGTCGACCACGTGGGTTTGAGGACCATGAGCGATGGTGACGGCATTTCCATCTTCGGTTCCTCCAACGTTTGGATTGACCATGTTTCCATGTCCAGGTGTCATGATGGTCTCATTGATGCCATCATGGGGTCCACTGCCATCACGATATCCAATTGTCACTTCACCCACCATAATGAGGTGATGTTGTTTGGAGCAAGTGATGGGTACTCGAATGATCAGATAATGCAAGTGACAGTAGCATTCAACCACTTTGGTCAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCTAAAGAGGTGACAAAGAGGGAGTACTCGCCGGAGGAAGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCCGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACCGGGGACATACGTTACAAGAATGACACGTTTTGCAGGCGCACTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 1299 49.73 MAMHRLLLTLSLLATTAFADIGNFDDYWKARAVDAEQAAAAAFEPNPETVTNSFNAEVGQLLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWAKNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIMTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSRCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKPGTYVTRMTRFAGALACFVGRPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33950432 33951990 - CmPI595203_05g025090.1 Cmu05g2509 417423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Cmu05g2509 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Cmu05g2509 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Cmu05g2509 432 SMART amb_all 157 354 IPR002022 -
Cmu05g2509 432 Pfam Pectate lyase 170 348 IPR002022 -
Cmu05g2509 432 Gene3D - 82 425 IPR012334 -
Cmu05g2509 432 PANTHER PECTATE LYASE 18-RELATED 40 429 IPR045032 GO:0030570(InterPro)
Cmu05g2509 432 Pfam Pectate lyase, N terminus 21 72 IPR007524 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2509 Cmu-Chr5:33950432 Cmu08g1687 Cmu-Chr8:28428660 4.20E-132 dispersed
Cmu08g0842 Cmu-Chr8:20695783 Cmu05g2509 Cmu-Chr5:33950432 4.00E-191 transposed
Cmu01g1409 Cmu-Chr1:27595283 Cmu05g2509 Cmu-Chr5:33950432 6.70E-178 wgd
Cmu10g2242 Cmu-Chr10:28521823 Cmu05g2509 Cmu-Chr5:33950432 3.40E-190 wgd
Cmu04g1292 Cmu-Chr4:27249964 Cmu05g2509 Cmu-Chr5:33950432 5.60E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2509 K01728 - csv:101206497 815.453