Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2512 ATGGAGGTAATCGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGCAGAAGAACAACAAGGAACAAGTTGAAACTGTGGAAGAGGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTGGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTAGAGACATATCTTCAACAAACACAAGTATGAGTAATGCAGAGAGTAATTCATCAACTTCCAAATTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTGAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCCCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCATGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCTGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCCAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAGCATAACCTTGTCGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGATCCTAGGCTTGAAGGTCATTTCTCAATAAAAGGTGCCCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGACCTTTGATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGATATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATACGATCCAGCCCAATGGCGAGAAACGGCTACCACACAGCAGCTGGACCGGTTCCAAAGAACGGGCAGCAACTACGCAGCTATTCAGTCGCGAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCCCATCCATCTCCGAAACCCAATGTCAAAGCCTAA 1467 43.42 MEVIAEDGKVESREVRESKGKKKQKNNKEQVETVEEETGCWIALRIFGSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHTAAGPVPKNGQQLRSYSVANGSHASPYHHQQPHPSPKPNVKA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 33966854 33970256 - CmPI595203_05g025120.1 Cmu05g2512 417426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2512 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Cmu05g2512 488 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Cmu05g2512 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524(InterPro)
Cmu05g2512 488 SMART serkin_6 131 414 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2512 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Cmu05g2512 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2512 488 MobiDBLite consensus disorder prediction 69 103 - -
Cmu05g2512 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2512 488 FunFam Probable serine/threonine-protein kinase PBL8 217 432 - -
Cmu05g2512 488 CDD STKc_IRAK 137 414 - -
Cmu05g2512 488 FunFam Serine/threonine-protein kinase BIK1 98 216 - -
Cmu05g2512 488 MobiDBLite consensus disorder prediction 454 475 - -
Cmu05g2512 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2512 488 MobiDBLite consensus disorder prediction 1 30 - -
Cmu05g2512 488 PANTHER OS01G0588500 PROTEIN-RELATED 97 415 IPR050823 -
Cmu05g2512 488 MobiDBLite consensus disorder prediction 69 107 - -
Cmu05g2512 488 MobiDBLite consensus disorder prediction 441 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0686 Cmu-Chr4:20964408 Cmu05g2512 Cmu-Chr5:33966854 8.10E-56 dispersed
Cmu05g2512 Cmu-Chr5:33966854 Cmu09g1763 Cmu-Chr9:33759929 1.40E-192 dispersed
Cmu05g2512 Cmu-Chr5:33966854 Cmu08g0836 Cmu-Chr8:20658523 4.90E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75570 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2512 - - - 0.0