Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2538 ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGGCGGGGTAATTCTGCAATGCACCAGAGGACCACCTCTACTACAACGGTTCGACTCGGACGAGTCCAGCCGCAGGCCCCTGGACATCGCACCATCTTCTGCAATGATCGCGACGCTAATCTTCTTGTCAAATTCAAGGGGAATTCAGTTTCGACGACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAAGTTGGAGACATTGTTAGGGTTCGGCAAGATGGATTTTTTCCTGCGGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGACGGGGAGACAAATTTGAAGATTAGGAAGGCCTTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATTGTTGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAAAAGAAACTTGACAAACTTATACTTACACTATTTGCTACTCTCTTTATGATGTGTTTGATTGGAGCCATCGGCAGTGGTGTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGTGAAAACCAATTCAACCCTCGCAACCGGTTCCTGGTTGTCATTCTGACCATGTTTACCCTGATTACTCTGTACTCGACAATCATTCCTATTTCCCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAAGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCCAGAACTTCCAATTTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACAGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGCACACAGATCAGCCAATGCTGTTCAAGAAAAGGGATTTAACTTCGATGATGCAAGGCTAATGAGAGGAGCATGGAGAAATGAGCCCAACGCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTTCCTGAGGGTGACGAATCCCCAGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACAACAATATATGTTCGCGAATCTCATGTTGAGAAGATGGGTAAAATCCAAGATGTTTCTTATGAAATTCTGAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTCTGTCGTTATTCTGATGGCAGGCTTGTTCTGTACTGCAAGGGTGCTGATACCGTAGTATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCCGGTCTGAGAACCCTATGCCTTGCTTACAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGAACTTATTTTGATTGGCTGTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTAACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACGGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTAGAGAAGAAGTAAAAAAGGAACTGAAGAGATGTCTTGAGGAAGCGCAGCAGTGTTTACATTCTGTCTCTCCACCAAAATTAGCACTCGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACTTTACTAAACTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAAGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCTCAGTTTCGCTTTCTCACAGATTTGCTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACGTACTTCTTTTACAAGAATCTTACATTCACTTTAACTCAGTTTTGGTTTACCTTCCAAACTGGATTTTCTGGTCAAAGATTCTACGATGATTGGTTCCAGTCGTTGTATAATGTCATATTCACCGCCCTACCTGTAATAATAGTTGGACTATTTGACAAGGATGTCAGTGCTTCCCTTTCCAAAAAGTACCCTGAGCTCTACAGAGAGGGAATAAAAAATGTGTTCTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCTAGTTCCAGCAGTCAATCGTCATCTGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACTTGCATTGTCGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCCGGTGGCATTATATTACGGTTGGGGGAAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCCGGTATTATGACACCCCATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTTATCCTTGTCCCCGTTGTTGCACTTCTTTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCTGAAGGTAGAGGTACGGCAGGATTGCTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTACGCCATGGCTCAACTCCCTCGAGAATTATCAAAGCACACTGGCTTTGCTTTTGACTCACCTGGCTACGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAAGCATGGGATGTTGCTAGGAGAGCCAGTGTGAAGTCAAGACCAAAGATTAAGGAAAAGAAGTATTTTCCCAACACAACATCCTTCAAGAGAAAGCTCAACAGAAGTCAAATCTCCTATGCTTTACTGAATGCAAGCTGTTTTAGATTCTCTTGGAGGCTAATTGATTCAGCAAGATGCTTTCTAGCCAGTAGCGTCAAGTTTCACTGTGTAATTATGGATTTGAGGAAGAAGTTGGGAAGACAGCAAAGGGAATGGATCAGAAACATTGTGCTATATGCTTTGTCTTTTATTGAGGTGGTCTTGCTTGGAGCTCTGGTTGTGGGGCTGTTTGTATGGCTTTTAATCGTTGGGTCGCCACCGCCGGGAAGAACGACAAGCTGGCCGGAAGCCAAGTCTGAGGTTGAGGGAAGCCGTGTCATGAAGCAAGCTAAGGAATTGACCAACATCAACCATCCAAAGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCGGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGACTCCCAGAGGAGCTTAG 4179 41.68 MSGWDRVRPSSSRFGRGNSAMHQRTTSTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRVRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFMMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVEEAHRSANAVQEKGFNFDDARLMRGAWRNEPNADLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELIEKELILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFIREEVKKELKRCLEEAQQCLHSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIKNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRGTAGLLEIQNHLTPEEARSYAMAQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIKEKKYFPNTTSFKRKLNRSQISYALLNASCFRFSWRLIDSARCFLASSVKFHCVIMDLRKKLGRQQREWIRNIVLYALSFIEVVLLGALVVGLFVWLLIVGSPPPGRTTSWPEAKSEVEGSRVMKQAKELTNINHPKLDPNFMSKVRVPKGPDPIHNRRIGVKGGTPRGA 1392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34158960 34180793 + CmPI595203_05g025380.1 Cmu05g2538 417452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2538 1392 Gene3D - 687 894 IPR023214 -
Cmu05g2538 1392 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cmu05g2538 1392 SFLD p-type atpase 404 905 IPR044492 -
Cmu05g2538 1392 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 30 1145 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Cmu05g2538 1392 Gene3D - 534 686 IPR023299 GO:0000166(InterPro)
Cmu05g2538 1392 MobiDBLite consensus disorder prediction 12 29 - -
Cmu05g2538 1392 MobiDBLite consensus disorder prediction 1 29 - -
Cmu05g2538 1392 NCBIfam HAD-IC family P-type ATPase 827 933 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu05g2538 1392 NCBIfam phospholipid-translocating P-type ATPase 59 1140 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cmu05g2538 1392 Gene3D - 124 289 - -
Cmu05g2538 1392 Pfam E1-E2 ATPase 143 322 - -
Cmu05g2538 1392 SFLD C1.7: P-type atpase like 404 905 - -
Cmu05g2538 1392 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1132 IPR032630 -
Cmu05g2538 1392 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cmu05g2538 1392 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Cmu05g2538 1392 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Cmu05g2538 1392 Pfam Cation transport ATPase (P-type) 518 614 - -
Cmu05g2538 1392 FunFam Phospholipid-transporting ATPase 687 894 - -
Cmu05g2538 1392 FunFam Phospholipid-transporting ATPase 531 686 - -
Cmu05g2538 1392 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1132 IPR023298 -
Cmu05g2538 1392 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Cmu05g2538 1392 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 487 692 IPR023299 GO:0000166(InterPro)
Cmu05g2538 1392 CDD P-type_ATPase_APLT_Dnf-like 61 1014 - -
Cmu05g2538 1392 MobiDBLite consensus disorder prediction 1356 1392 - -
Cmu05g2538 1392 FunFam Phospholipid-transporting ATPase 120 289 - -
Cmu05g2538 1392 SUPERFAMILY HAD-like 410 897 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0684 Cmu-Chr4:20939019 Cmu05g2538 Cmu-Chr5:34158960 5.10E-194 dispersed
Cmu05g2377 Cmu-Chr5:32996256 Cmu05g2538 Cmu-Chr5:34158960 2.10E-278 dispersed
Cmu05g2538 Cmu-Chr5:34158960 Cmu06g0842 Cmu-Chr6:10853925 3.70E-275 dispersed
Cmu05g2538 Cmu-Chr5:34158960 Cmu08g0854 Cmu-Chr8:20836001 8.40E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2538 K14802 - csv:101207069 2368.96