Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2541 ATGGTAAAAATGATTTGCGATTGCCAAAGCAGTGTCGGTATAAGAGGCAGCGGCGTTACCGACACGTCGGTTGCGGATTGCTGCAGCAATTTAACCTTAAGGACAAAAATAACAGAGTGCGGCGGAGTAGACGCCTTTAGTTTTGAGTCGGAAATGAACGGGTCTCGCACGTGCTCGCTGTGTGGGAACAACGGCCACAACTCCCGCACGTGCCCGGAAGGGGACGTCGGCGGGTTCATGTTGTTCGGAGTTAGGGTGACGACGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTGTCACAATACGAGCAGCCTCAAAGTCAAGACTCCAACAACGCTGATGCCGGATACGCTTCGGACGACGTCGTTCACCCATCTGACCGTGGCGGCGGCCGGAAGAGAGGGATTCCGTGGACAGAAGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAGGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAGACGCGTACGTCAACTCAGGTTGCGAGTCATGCTCAGAAATACTTTCTCCGACGGAATAATTTCAATCGGAGACGCCGTAGGTCCAGCCTTTTCGATATCACTACTCACACATTCACGAGCTCATCCACGGAAGACGATTTGATATTTTCCGGCCACGAGGTTATGCCGCTACCGCTGCCACCGTCACAGCCGCAAAAAGACACCCTTCCGGGAAATTTCCCGGTGAAAATCTATCCAGCGAAACCACCTCCTGCCGCCGTGGCCGGTGGCGCCGTTGATAGCAACGCCGTAGAGGGTACACTAACACCAAGTTCATCAAATTATCAGGCAAAGACTTGCAGTTCCAGAATTAGTCGTCCAATACCAATGCTTCCTCTATCTCCATACCCAAAGTTGGCTGAATTGAACATTAACGAGAGAACGCCAGAAGACCCTTTACCTCTAACTTTGAAGCTTTCAACTCCACACTCGGAGGAACAGTCACCGGCGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTGTCAGTGTTGCTTGA 1080 51.48 MVKMICDCQSSVGIRGSGVTDTSVADCCSNLTLRTKITECGGVDAFSFESEMNGSRTCSLCGNNGHNSRTCPEGDVGGFMLFGVRVTTEGSNSFRKSVSMNNLSQYEQPQSQDSNNADAGYASDDVVHPSDRGGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTSTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSTEDDLIFSGHEVMPLPLPPSQPQKDTLPGNFPVKIYPAKPPPAAVAGGAVDSNAVEGTLTPSSSNYQAKTCSSRISRPIPMLPLSPYPKLAELNINERTPEDPLPLTLKLSTPHSEEQSPAAASQSSGSFQTMSGGGDSIDIVSVA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34191147 34196798 - CmPI595203_05g025410.1 Cmu05g2541 417455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2541 359 ProSiteProfiles Zinc finger CCHC-type profile. 58 73 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cmu05g2541 359 Gene3D - 140 192 - -
Cmu05g2541 359 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Cmu05g2541 359 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Cmu05g2541 359 ProSiteProfiles Myb-like domain profile. 141 186 IPR001005 -
Cmu05g2541 359 MobiDBLite consensus disorder prediction 104 139 - -
Cmu05g2541 359 MobiDBLite consensus disorder prediction 324 351 - -
Cmu05g2541 359 MobiDBLite consensus disorder prediction 104 119 - -
Cmu05g2541 359 CDD SANT 141 185 IPR001005 -
Cmu05g2541 359 PANTHER TRANSCRIPTION FACTOR KUA1 55 266 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Cmu05g2541 359 FunFam transcription factor MYB1R1 140 191 - -
Cmu05g2541 359 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 188 IPR006447 GO:0003677(InterPro)
Cmu05g2541 359 MobiDBLite consensus disorder prediction 312 359 - -
Cmu05g2541 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 190 IPR017930 -
Cmu05g2541 359 SMART sant 138 188 IPR001005 -
Cmu05g2541 359 SUPERFAMILY Homeodomain-like 136 191 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2541 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2541 Cmu-Chr5:34191147 Cmu08g1634 Cmu-Chr8:28033046 8.50E-30 dispersed
Cmu09g0016 Cmu-Chr9:454002 Cmu05g2541 Cmu-Chr5:34191147 1.20E-39 transposed
Cmu10g1089 Cmu-Chr10:3141422 Cmu05g2541 Cmu-Chr5:34191147 4.20E-39 transposed
Cmu01g1386 Cmu-Chr1:27351775 Cmu05g2541 Cmu-Chr5:34191147 1.80E-36 wgd
Cmu05g2541 Cmu-Chr5:34191147 Cmu06g1711 Cmu-Chr6:28122849 2.20E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g806 . . . . . . . . Cmo04g01686 . . . . . Sed04g0666 . Cpe01g01422 Bhi07g01651 Tan04g1157 Cmetu10g0115 Lac13g0251 Hepe10g1689 . . Cla05g02500 Cam05g2684 Cec05g2717 Cco05g2752 Clacu05g2687 Cmu05g2541 Cre05g2656 . . . Cone12ag0614 . Csa05g02385 Chy10g00949 Cme10g00477 . . . . . . . . . . . Cma04g01608 . Car04g01650 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013797 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6289 PF00249 Myb_DNA-binding 4.70E-10 CL0123 Cmu TF