Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2549 | ATGGCCAGAAACTCCATCTTCTCCCTCCGCCGGAGGTCGGATCCGTTCGACGGTTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAACCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTAGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATATGAATTGCTAAAGAAAATTAAGGAGTCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCCCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA | 699 | 48.78 | MARNSIFSLRRRSDPFDGLDRFTTSDSEVHVLAVDDNLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETSSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34264382 | 34265364 | - | CmPI595203_05g025490.1 | Cmu05g2549 | 417463 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2549 | 232 | MobiDBLite | consensus disorder prediction | 180 | 232 | - | - | |
Cmu05g2549 | 232 | Pfam | Response regulator receiver domain | 31 | 150 | IPR001789 | GO:0000160(InterPro) | |
Cmu05g2549 | 232 | Gene3D | - | 29 | 187 | - | - | |
Cmu05g2549 | 232 | SUPERFAMILY | CheY-like | 29 | 154 | IPR011006 | - | |
Cmu05g2549 | 232 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 26 | 218 | IPR045279 | GO:0009736(InterPro) | |
Cmu05g2549 | 232 | MobiDBLite | consensus disorder prediction | 161 | 232 | - | - | |
Cmu05g2549 | 232 | CDD | REC_typeA_ARR | 31 | 153 | - | - | |
Cmu05g2549 | 232 | MobiDBLite | consensus disorder prediction | 161 | 179 | - | - | |
Cmu05g2549 | 232 | SMART | REC_2 | 29 | 154 | IPR001789 | GO:0000160(InterPro) | |
Cmu05g2549 | 232 | ProSiteProfiles | Response regulatory domain profile. | 30 | 158 | IPR001789 | GO:0000160(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2549 | Cmu-Chr5:34264382 | Cmu05g2725 | Cmu-Chr5:35717799 | 4.20E-38 | dispersed | |
Cmu01g0720 | Cmu-Chr1:8075246 | Cmu05g2549 | Cmu-Chr5:34264382 | 3.40E-39 | transposed | |
Cmu10g2355 | Cmu-Chr10:29898023 | Cmu05g2549 | Cmu-Chr5:34264382 | 1.90E-40 | transposed | |
Cmu05g2549 | Cmu-Chr5:34264382 | Cmu06g1714 | Cmu-Chr6:28166954 | 2.60E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6291 | PF00072 | Response_reg | 1.20E-21 | CL0304 | Cmu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2549 | K14492 | - | csv:101209506 | 338.576 |