Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2549 ATGGCCAGAAACTCCATCTTCTCCCTCCGCCGGAGGTCGGATCCGTTCGACGGTTTAGATCGTTTCACCACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAACCTCGTCGACCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTAGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAGTTCCCAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATATGAATTGCTAAAGAAAATTAAGGAGTCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTAGCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACTGGAAGTGAAAGAAGTGGGATCAACAAAAGGAAGCTACGAGAGCCGTGTGATCAACCTTCGTCATCGCCGTCCATTTCATCCCCAGCATCATCGGATTCCTCTCCATCATGTCCATCATCTTCATCACCGTCAGATTCGCTTCAATCAACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCTACTCCTCAATCCGACGGCTCTAAATGA 699 48.78 MARNSIFSLRRRSDPFDGLDRFTTSDSEVHVLAVDDNLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETSSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLADVKRLREYMVGDEKTGSERSGINKRKLREPCDQPSSSPSISSPASSDSSPSCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34264382 34265364 - CmPI595203_05g025490.1 Cmu05g2549 417463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2549 232 MobiDBLite consensus disorder prediction 180 232 - -
Cmu05g2549 232 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160(InterPro)
Cmu05g2549 232 Gene3D - 29 187 - -
Cmu05g2549 232 SUPERFAMILY CheY-like 29 154 IPR011006 -
Cmu05g2549 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 218 IPR045279 GO:0009736(InterPro)
Cmu05g2549 232 MobiDBLite consensus disorder prediction 161 232 - -
Cmu05g2549 232 CDD REC_typeA_ARR 31 153 - -
Cmu05g2549 232 MobiDBLite consensus disorder prediction 161 179 - -
Cmu05g2549 232 SMART REC_2 29 154 IPR001789 GO:0000160(InterPro)
Cmu05g2549 232 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2549 Cmu-Chr5:34264382 Cmu05g2725 Cmu-Chr5:35717799 4.20E-38 dispersed
Cmu01g0720 Cmu-Chr1:8075246 Cmu05g2549 Cmu-Chr5:34264382 3.40E-39 transposed
Cmu10g2355 Cmu-Chr10:29898023 Cmu05g2549 Cmu-Chr5:34264382 1.90E-40 transposed
Cmu05g2549 Cmu-Chr5:34264382 Cmu06g1714 Cmu-Chr6:28166954 2.60E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6291 PF00072 Response_reg 1.20E-21 CL0304 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2549 K14492 - csv:101209506 338.576