Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2572 ATGGCATCAAGATCCCCCACAAACTTTTTGGACCTGGCTTCTGGAGATTTACTGGATGTCCCTCGTACACCCAGGTCCCTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGAAGTAATGATGGAGATTCGGAGTCTTCATCTGTGTACCGTGAGAGGAAAATCATAGTTGCGAATATGTTGCCCTTGCACGCTAAAAAAGATGGGGAATCTGGCAAATGGTGCTTCAGTTTAGATGAGGATTCAATTTTATTGCAGCTAAAGAATGGGTTTTCGCCTGAGATGGAGGTTATATACATTGGTTCCCTCAAGGTTGAAATCGACGCCAGCGAACAGGAAGAGGTTGCTCAGAAGCTGTTCGACAATTTTAATTTTGTACCTACATTTCTTCCTTCTGATCTCCAAAAAAACTTTTATCTTGGGTTTTGCAAACAGCAGCTTTGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCAGCTTTGGCAAGCCTATGTTTCTGCGAATAAAATGTTTGCCGACAAGGTGATGGAAATCATCAATCCTGAGGAAGATTCTATTTGGGTTCATGATTATCATTTAATGGTTCTTCCAACGTTCCTGAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTTCTGCATAGCCCGTTTCCATCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGTTAAACTGTGATTTACTTGGTTTTCATACGTTTGATTATGCACGTCACTTCCTCTCATGCTGCAGCAGAATGTTGGGCTTGGACTATGAATCTAAGCGGGGACATATTGGACTGGATTATTATGGTCGCACGGTATATATCAAAATTCTGCCTGTAGGAATTCACATGGGTCGGCTGGAATCAGTGATGAATCTTCCATCTACATTTGCTAAAGTCAAAGAAATTCGAGATCAGTTCATGGGGAAGAAACTAATACTTGGTATTGATGACATGGACATTTTTAAGGGTATAAGCCTGAAGCTTCTCGCTGTGGAACAGCTTTTACGGCAACATCATGAGTTGCGGGGCAAAATAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGAAAAGATGTACATGAAGCTCAGAAGGAAACCTATTTGGCTGCTGAAAGGATCAATCAAGCTTACGGTTCAAATAACTACAAACCAGTAATTCTGATTGATCGCCCAGTTCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGCATGAATTTGGTTCCATACAAGTATATTGTCTGCAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCTCCTCGGACGAGTATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCGCCCTCTTTAAGTGGAGCAATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCCGATGCCTTGGAACTAGCCATAACAATACCGGAGTCAGAGAAGCAGCTGCGGCATGAAAAACATTATCGATATGTCAGTTCCCACGATATAGGATATTGGTCTCGTAGTTTTATGCAAGATTTAGACAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGGATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACTATTGATCACATTGTCTCAGCTTATAAAAGAACTCATAGAAGAGCGATATTTTTGGATTACGATGGCACTATCATTTCACAAAGCTCTATAATTAAGACACCAAGCCCTGAAGTTATCTCTGTCTTGACTACGCTTTGCAATGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTCAGTGGTTTGCGTCTTGTGAGATGTTGGGGATTGCAGCAGAACATGGGTACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCATTGTCTTCTGATCTGGATTGGATTAAAATTGTGGAGCCAGTGATGAGATTATATACCGAAGCAACAGATGGCTCGTGCATAGAACCCAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGCCAAGGAATTGCTGGACCATCTAGAAAATGTACTTGCCAACGAACCGGCCGTTGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTCGTTATGTGCATTGGAGATGATCGATCAGATGAAGATATGTTTGAGAGCATATTAAGCACTGTCTCCAGTCCCTCACTGCCTTCCGCTCCAGAAATTTTTGCCTGTACTGTTGGGCGAAAGCCAAGCAAGGCCAAGTTTTACCTTGATGATACTTCCGACGTCGTGAAATTGCTGCAATGCCTTGCCTCTTCGTCACGTCCAAGACCTCGGCAACTACCACAGATGCGTGTTTCTTTTGAGAGTGTTTTTTGA 2583 43.52 MASRSPTNFLDLASGDLLDVPRTPRSLPRVMTVPGIISELDDYGSNDGDSESSSVYRERKIIVANMLPLHAKKDGESGKWCFSLDEDSILLQLKNGFSPEMEVIYIGSLKVEIDASEQEEVAQKLFDNFNFVPTFLPSDLQKNFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKMFADKVMEIINPEEDSIWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLLGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVKEIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQHHELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINQAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITIPESEKQLRHEKHYRYVSSHDIGYWSRSFMQDLDRACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIISQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGQWFASCEMLGIAAEHGYFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSRPRPRQLPQMRVSFESVF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34441531 34444276 - CmPI595203_05g025720.1 Cmu05g2572 417486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2572 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Cmu05g2572 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0005992(InterPro)
Cmu05g2572 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Cmu05g2572 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Cmu05g2572 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Cmu05g2572 860 Gene3D - 720 848 IPR023214 -
Cmu05g2572 860 Gene3D - 590 709 IPR023214 -
Cmu05g2572 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Cmu05g2572 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Cmu05g2572 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Cmu05g2572 860 CDD HAD_TPP 592 833 - -
Cmu05g2572 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Cmu05g2572 860 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Cmu05g2572 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
Cmu05g2572 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Cmu05g2572 860 NCBIfam trehalose-phosphatase 589 839 IPR003337 GO:0005992(InterPro)
Cmu05g2572 860 CDD GT20_TPS 59 543 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2572 K16055 - - csv:101212688 1705.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2336 Cmu-Chr1:35504962 Cmu05g2572 Cmu-Chr5:34441531 0.00E+00 dispersed
Cmu05g2572 Cmu-Chr5:34441531 Cmu10g0990 Cmu-Chr10:1896051 0.00E+00 dispersed
Cmu05g2572 Cmu-Chr5:34441531 Cmu06g1737 Cmu-Chr6:28331807 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g745 . . . . . Bpe10g00831 Bma14g01784 Bma15g00201 . . . . . . . . Cpe01g01518 . . . . . . . Cla05g02526 Cam05g2715 Cec05g2747 Cco05g2787 Clacu05g2718 Cmu05g2572 Cre05g2685 Cone13ag1029 Cone19ag1019 . . Lsi04g00531 Csa05g02351 Chy10g00918 Cme10g00508 Blo06g00869 Blo11g00904 Bda07g01593 . . . . . . . . Cma04g01714 . Car04g01747 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0183 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 58.3 4.5e-196 681.4
Cmu07g0305 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1322.8
Cmu01g2336 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.6
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Cmu06g1737 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Cmu11g1723 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.9e-249 858.2
Cmu03g1320 . 91 699 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.9e-242 833.2
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Cmu10g0990 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cmu01g2336 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.8
Cmu07g0305 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 60.0 2.1e-313 1071.6
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Cmu10g0990 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cmu01g2336 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 5.3e-312 1067.0
Cmu07g0305 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.7 3.5e-308 1054.3
Cmu10g0990 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cmu01g2336 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.6
Cmu07g0305 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1125.9
Cmu05g2572 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cmu06g1737 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cmu06g1737 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cmu01g2336 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 4.1e-290 994.2
Cmu07g0305 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 1.4e-285 979.2
Cmu10g0990 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.8e-285 976.9
Cmu11g1723 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Cmu03g1320 . 62 935 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Cmu05g2572 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.9e-308 1053.1
Cmu06g1737 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cmu01g2336 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 3.3e-298 1021.1
Cmu07g0305 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.1 6.7e-291 996.9
Cmu10g0990 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cmu01g2336 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.4
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Cmu07g0305 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1125.5
Cmu06g1737 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cmu11g1723 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 2.0e-305 1045.0
Cmu03g1320 . 95 929 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Cmu11g1723 . 1 921 Trehalose Biosynthesis Gene Families AT1G78580 79.6 0.0e+00 1482.6
Cmu03g1320 . 62 935 Trehalose Biosynthesis Gene Families AT1G78580 75.9 0.0e+00 1347.0
Cmu11g1723 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.4 2.9e-249 858.2
Cmu03g1320 . 91 699 Trehalose Biosynthesis Gene Families AT1G16980 64.6 9.9e-242 833.2
Cmu11g1723 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 4.1e-194 675.2
Cmu03g1320 . 96 614 Trehalose Biosynthesis Gene Families AT1G17000 61.5 2.7e-190 662.5
Cmu11g1723 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 2.0e-305 1045.0
Cmu03g1320 . 95 929 Trehalose Biosynthesis Gene Families AT4G27550 59.3 6.3e-288 986.9
Cmu10g0990 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.5 0.0e+00 1379.0
Cmu01g2336 . 3 819 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1161.4
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.7 0.0e+00 1137.9
Cmu07g0305 . 1 825 Trehalose Biosynthesis Gene Families AT4G17770 61.9 0.0e+00 1125.5
Cmu06g1737 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.7 0.0e+00 1110.5
Cmu10g0990 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 72.0 0.0e+00 1272.7
Cmu01g2336 . 2 827 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1143.6
Cmu07g0305 . 1 820 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1125.9
Cmu05g2572 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.9
Cmu06g1737 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1094.3
Cmu07g0305 . 1 817 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1322.8
Cmu01g2336 . 1 826 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1321.6
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.4 0.0e+00 1152.1
Cmu05g2572 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.8 0.0e+00 1092.0
Cmu06g1737 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.7 2.6e-303 1038.1
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cmu06g1737 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.3 0.0e+00 1102.4
Cmu01g2336 . 6 830 Trehalose Biosynthesis Gene Families AT1G70290 57.9 4.1e-290 994.2
Cmu07g0305 . 1 827 Trehalose Biosynthesis Gene Families AT1G70290 56.9 1.4e-285 979.2
Cmu10g0990 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.6 6.8e-285 976.9
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1346.6
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.2 0.0e+00 1211.1
Cmu10g0990 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.5 0.0e+00 1107.0
Cmu01g2336 . 5 827 Trehalose Biosynthesis Gene Families AT1G23870 62.1 0.0e+00 1092.8
Cmu07g0305 . 1 818 Trehalose Biosynthesis Gene Families AT1G23870 60.0 2.1e-313 1071.6
Cmu05g2572 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.1 0.0e+00 1328.5
Cmu06g1737 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.2 0.0e+00 1233.4
Cmu10g0990 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 60.0 0.0e+00 1078.9
Cmu01g2336 . 6 831 Trehalose Biosynthesis Gene Families AT1G60140 61.1 5.3e-312 1067.0
Cmu07g0305 . 1 821 Trehalose Biosynthesis Gene Families AT1G60140 59.7 3.5e-308 1054.3
Cmu05g2572 . 33 842 Trehalose Biosynthesis Gene Families AT2G18700 61.1 7.9e-308 1053.1
Cmu06g1737 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.4 3.2e-301 1031.2
Cmu10g0990 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.6 2.0e-298 1021.9
Cmu01g2336 . 1 823 Trehalose Biosynthesis Gene Families AT2G18700 59.7 3.3e-298 1021.1
Cmu07g0305 . 31 817 Trehalose Biosynthesis Gene Families AT2G18700 60.1 6.7e-291 996.9
Cmu01g0183 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 58.3 4.5e-196 681.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000820 3 9 5 4 5 2 1 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 1 2 6 7 2 91