Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2580 ATGACTATATCATTCTCAGAAAAGGTAAAGAAAGAGTGGCTTTTGGGCCGAGGCCCAAAAGCGTCCAAGGACAACGAACTTTCGCCTTGGTTATTACTGGACTCAAACCTACTAAAGAACCCATGGGTTCTGAAATCGCTTCTCCGGCTCTTCCCTTATTCTCTAGTCTCTAGGGCACAACGTACTCCAATTACTTCGTCGGAAAATCTGAAAGATAAGCCTGGAAGCTTTCAACTTCCTTGCGATCTTCTTTCGACTTCAATGGCGGATTCTTCCTCTTCCCCTGCGACTCTCGATTCAAATCCTCAAGCTGCCGAGCCGGAAAACCCCAATTCACAGGCCAACAAACCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCGCTACCACCAACATCTCTTTCTGTCGGAATAAACCCTACCTTGCATCCACCCTTAGTGTCAACGCCGCAACCACCTCCTTCTCTATCGTATGCCCCCTCACCCTTATCCGGTGCGGTGGCCGTTCCTCCGACGGCACCGTCTTTCCGGCCTGTGCCTCTCTCAGCTCATCACTTCTCGCCCATGCCCGGCACTGGCATGCTGAACCCAAGCTATCCAAACCCTGGGGTTCAGCCTCCGGGGGTTAGCTCGGTTGCGGCGCCTGCTCCCGGTATGGCAAGTGGCGGCACGGGAGCAGTTCCACTTCCAGTGCCACAACCGATGATGGCTTATCAAGTTCCACCGGGTCAGGTTCCGAATCCGGCGATGAGGCCGTACGCCACCATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCATTTCCTCTCGCTGGAATTCCACGTTTCCCTTCTCCATATCCTGCTATGATTAGGACGCCTTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGCAATGCCACGACCTCCTATTCCTGGGATTCCTGGTGTGCGCCCAATCATCCCTCCTGTGGTTAGGCCTGCTGTGCTCCCAAGTGTTACACCAGCCGAACAACCACAAACTACTATTTATATTGGCCGAATTGCACAATCAGTGGATAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGGGCCCAAAATCCATCGGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGTGTTCTTCGGGCACTACGGTTACTGACAAAGTTAAACATTGATGGACAAGAACTAGTGCTAAAAGGTACTCAAGCAACAAGAGATTATCTGAAGCGTTATGTTGAAAAGAAAGCAGAGAATTCAAAGAAACTGAAAGAAACACAAGTTTCAGAGACTAAGGAAGAAGAAGCAGCCACAACAAATGTGGCTAGAAATGAAACTTCAAAGCCCTCTGCAGAGGATTCAAAGGAAGATAACGATTCAGGGGAAAAGGATCTTGACATTGCCCGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCAGACCGTGTGGCGTCGGAAAAACTTACAAATGCACTGGAGGAGAGGTTGAAGTCTAGACCTCTGCCACCACCTCCTCTTATGACAACTGCTGATGTCTCTGGTAATTCAAGTGCGGAGCCATTTGCTAAATTGAAAGATGGTGAAGCTGACACTGATGTTTTGAAACCTGATGCAGCTGATGATAGAAATGATGATGACACAACTAGTGACCATAAACAAACTAGTGAGCAAGACAAGCCTGAAACAAGCTCACCGGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAAAGAGATAGGGAGAGGGATCTGAAAAGGGATAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAGGAGAGGGAACAAAGAAGAAAGTTTGAGGAGGCCGAGCGACAGTATGAAGAATGTCTCAAAGAGTGGGAATATCGAGAAAGAGAGAGAGAAAAGCAGAGGCAGTATGAGAAGGAGAGGGAGAAAGAGAAAGAGCGTAAAAGAAAGAAAGAGATATTGTATGATGAAGATGACGAGGATGACGATTCAAGAAGAAAATGGCGCAGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTCGAGAAAAGGAAGATGATTCGGTCGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCTGCAGAAACAGAAAGACCCGCTGAAACTTGTATCTGGTCAGATGTCGAATGTCAACGAGAAAACTATTCTTGCTGAAGAATCTGCTAATGAGATTAAAGTTATGGCTTCTGAACGTGAATCTGAGCTTGACTCTAGCTGTGATAACCATATAGGGGATGGGATCTTGCAAAATGGTAGTGGTGATGAACTAAGTACGATACCATCAGAGACTCGACATAGTGGAGGGCTGCCTGCAAAAAGGTTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCAGTTTTCCATGAGGAGGAGGATGATGAAGCACAGAAAGAGAAAAAGATGAGGCCGCTGGTTCCAATTGATTACTCAGCTGAGGAACTACAGGCTGTTCAACCTGCCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCTGAGTTTGCAAAACGTATATCTAATGTTAATTCCAAAGAAGAGAAGTCTGATGGTGAAAGGGAGCGAGGAAGGCGTTCCGGTGAAAAGTCAGGTCATAGAGACCGAAATGATGAGGATACCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGATAGGGAGCGAGACCATGTTTTGGATAAAGTAAAAACACCAGATAACAAAAAACTTTTGGATGCGAAACAGTTGATTGATATGATTCCAAAGACAAAAGAGGAATTATTCTCATATGATATAAATTGGGCTATTTATGAAAAGCATGCACTACATGAGAGAATGAGACCGTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACCACTCTTGTGGATTACATAGTTTCAAGTACTCAGGAACACGTAAAGGCATCTCAGATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTCATCTTCGAAATAAAAAAGGTAGAGACTGGTCTAGCTTTCAGAACAAAAGCATGA 3174 46.47 MTISFSEKVKKEWLLGRGPKASKDNELSPWLLLDSNLLKNPWVLKSLLRLFPYSLVSRAQRTPITSSENLKDKPGSFQLPCDLLSTSMADSSSSPATLDSNPQAAEPENPNSQANKPESAASSFPPPQSLPPTSLSVGINPTLHPPLVSTPQPPPSLSYAPSPLSGAVAVPPTAPSFRPVPLSAHHFSPMPGTGMLNPSYPNPGVQPPGVSSVAAPAPGMASGGTGAVPLPVPQPMMAYQVPPGQVPNPAMRPYATMPNGFAAVPTATPQGAFPLAGIPRFPSPYPAMIRTPFPPRPPGAMGMVPAMPRPPIPGIPGVRPIIPPVVRPAVLPSVTPAEQPQTTIYIGRIAQSVDNDFMLSLLQLCGPVKSWKRAQNPSDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKLKETQVSETKEEEAATTNVARNETSKPSAEDSKEDNDSGEKDLDIARSAVLSDEDRDADRVASEKLTNALEERLKSRPLPPPPLMTTADVSGNSSAEPFAKLKDGEADTDVLKPDAADDRNDDDTTSDHKQTSEQDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEEAERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRKAEEEQLQKQKDPLKLVSGQMSNVNEKTILAEESANEIKVMASERESELDSSCDNHIGDGILQNGSGDELSTIPSETRHSGGLPAKRLGFGLVGSGKRTAVPSVFHEEEDDEAQKEKKMRPLVPIDYSAEELQAVQPASTGALPPNLAAAAEFAKRISNVNSKEEKSDGERERGRRSGEKSGHRDRNDEDTYRSKDENKTIDRDRERDHVLDKVKTPDNKKLLDAKQLIDMIPKTKEELFSYDINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVETGLAFRTKA 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34519425 34525256 - CmPI595203_05g025800.1 Cmu05g2580 417494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2580 1057 Gene3D - 335 455 IPR012677 -
Cmu05g2580 1057 Pfam RNA recognition motif 344 413 IPR000504 GO:0003723(InterPro)
Cmu05g2580 1057 FunFam RNA Binding Motif protein homolog 936 1052 - -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 435 635 - -
Cmu05g2580 1057 SMART pwi_2 973 1046 IPR002483 -
Cmu05g2580 1057 Gene3D PWI domain 936 1052 - -
Cmu05g2580 1057 Coils Coil 594 643 - -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 146 160 - -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 882 933 - -
Cmu05g2580 1057 ProSiteProfiles PWI domain profile. 960 1057 IPR002483 -
Cmu05g2580 1057 Pfam PWI domain 980 1043 IPR002483 -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 539 635 - -
Cmu05g2580 1057 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 88 1057 IPR053294 -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 825 847 - -
Cmu05g2580 1057 SUPERFAMILY PWI domain 978 1045 IPR036483 -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 435 455 - -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 647 742 - -
Cmu05g2580 1057 Coils Coil 647 674 - -
Cmu05g2580 1057 SUPERFAMILY RNA-binding domain, RBD 336 415 IPR035979 GO:0003676(InterPro)
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 464 510 - -
Cmu05g2580 1057 Coils Coil 430 450 - -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 647 734 - -
Cmu05g2580 1057 SMART rrm1_1 343 416 IPR000504 GO:0003723(InterPro)
Cmu05g2580 1057 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 427 IPR000504 GO:0003723(InterPro)
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 80 123 - -
Cmu05g2580 1057 Coils Coil 704 731 - -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 764 847 - -
Cmu05g2580 1057 CDD RRM_RBM25 342 425 IPR034268 -
Cmu05g2580 1057 MobiDBLite consensus disorder prediction 66 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2580 K12822 - - csv:101214372 1093.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47