Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2586 ATGATTCGCAGAAATTTTGGAGCAGAATTGATGGTTCACATGGCATCTTTCAGTTCTTATCGTTTCTCCCAAGATTTGGGCAAAAATGGCGAGAATAGAACAAATAACAGTGCATTGCAAGAGGAAGAGGAGGAGGATTGCGAGAGAAGAAGAATAATGTCTTCTTCAAACGATACTTCTTCTCCTTCGTCGGATTCTATTTCAGATTCAAGTTTGCCGCCTGAAGCTTTGGATTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTTCTCCTACTCCCTCTTCTCCTCCACCCTCACCGCAGACAGATGGTTTTTCATCGATGATATTGAATCATGATGATGGTCTTCTGCCGTCGACTCTTTCATCCGCAACTATAGCTCCACCTATCGACGACCTAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAGATCCTGGAACTACACCGCCGGCCCCTACTGGCGACTCCGATTCAAATGCATCTGGCGACAATCCCTCGCCACCGCCTGAAGATTCTGCTTCGCCACCACCGTCTCCTCAGCCGCGGCCTCATCCACCACCGCCTTCACCACCGCCTCCACAACAGCCGTCTCTGGTTGGCGTCGTTAATCCTCCACCTACCCCTGTTCCGACTACAAAAGCATCTTCGACACCTCCAGGAAGCCCACCTTCTCCAATATCTGAGGATGAACCCTTTGTCCCGGTGGATCAGAGCGCCGTTCAGACTCCTAATACAGACAAGGAGCCTCCACCATCTGAACCAACGGATGCCCTTCCTCCATCAGAAAATCCAGTCACGATTCCTTCACCAGCTGCAAACCCGGCGACGGGGAAACGAACTCCGGGTCCACCTCAAGGAATTGCTACTCCCACATCAGAGTCTAACATTCTTTCACCTCCCACAACCACATTCACATCCACATCCACTCGCACTCCGAACAACTCACCTCATTTCGCCGACTCAACGCCAGTGAAATCACCATTAGGGCAGTCCAAGGCACCATCGTCTGGTTCAAGTAGTCAAACCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTTTCGTAATCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGAGAGAGATGTATACGGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGTAACTCTGGTTCTACTGAAGGCTTCTATACTCAGGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAGAGGGACAGGATACAGTGGCAGTGGAACAGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCAGAAGGGAAGTCGGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTTAAGGCAGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCATAGCGGTAATGGAGTGCCTGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCCGCAAAGGGTTTGGCATATCTTCATGAAGATTGTCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGACGCTTTTGAGGCGCAGGTCGCAGATTTTGGACTTGCGAAACTGACAAATGATACACACACTCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCAACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACCGGGGAGTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGTGTTCGTCATTCCGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGAGCACTAGACATTGAAAGTGACATTTCTGACCTCTCCAATGGTGTTAAATATGGCCAAAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTTCGAATACGATATTTACAGTAGCGAATACAATTCCAGAGAAATGACTGCAAGTCGTGAATCATGGAGATTCAACACTAACTCAAGTGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACAACAAAGTCACCATAGTGGTCGACAATTCTAA 2490 47.79 MIRRNFGAELMVHMASFSSYRFSQDLGKNGENRTNNSALQEEEEEDCERRRIMSSSNDTSSPSSDSISDSSLPPEALDSSSSPPPPPPPSPTPSSPPPSPQTDGFSSMILNHDDGLLPSTLSSATIAPPIDDLVSPSSSPPAPPDPGTTPPAPTGDSDSNASGDNPSPPPEDSASPPPSPQPRPHPPPPSPPPPQQPSLVGVVNPPPTPVPTTKASSTPPGSPPSPISEDEPFVPVDQSAVQTPNTDKEPPPSEPTDALPPSENPVTIPSPAANPATGKRTPGPPQGIATPTSESNILSPPTTTFTSTSTRTPNNSPHFADSTPVKSPLGQSKAPSSGSSSQTDVAVGAAVAGVFVIVLVAVVFMFTRKKKRRREMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQRGTGYSGSGTESGVINSAKFFFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPEGKSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLHSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDISDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSFEYDIYSSEYNSREMTASRESWRFNTNSSGESETQAFKGRTGAQQSHHSGRQF 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34571610 34575096 + CmPI595203_05g025860.1 Cmu05g2586 417500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2586 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2586 829 MobiDBLite consensus disorder prediction 286 342 - -
Cmu05g2586 829 MobiDBLite consensus disorder prediction 134 151 - -
Cmu05g2586 829 CDD STKc_IRAK 466 735 - -
Cmu05g2586 829 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 310 770 IPR047117 -
Cmu05g2586 829 MobiDBLite consensus disorder prediction 23 342 - -
Cmu05g2586 829 Pfam Protein tyrosine and serine/threonine kinase 463 732 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g2586 829 MobiDBLite consensus disorder prediction 152 168 - -
Cmu05g2586 829 FunFam Proline-rich receptor-like protein kinase PERK8 433 535 - -
Cmu05g2586 829 SMART serkin_6 460 734 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2586 829 MobiDBLite consensus disorder prediction 78 100 - -
Cmu05g2586 829 Gene3D Phosphorylase Kinase; domain 1 429 535 - -
Cmu05g2586 829 ProSiteProfiles Protein kinase domain profile. 460 740 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g2586 829 MobiDBLite consensus disorder prediction 54 77 - -
Cmu05g2586 829 MobiDBLite consensus disorder prediction 169 230 - -
Cmu05g2586 829 MobiDBLite consensus disorder prediction 37 53 - -
Cmu05g2586 829 ProSitePatterns Protein kinases ATP-binding region signature. 466 488 IPR017441 GO:0005524(InterPro)
Cmu05g2586 829 MobiDBLite consensus disorder prediction 800 829 - -
Cmu05g2586 829 FunFam proline-rich receptor-like protein kinase PERK8 536 749 - -
Cmu05g2586 829 SUPERFAMILY Protein kinase-like (PK-like) 441 734 IPR011009 -
Cmu05g2586 829 Gene3D Transferase(Phosphotransferase) domain 1 536 748 - -
Cmu05g2586 829 MobiDBLite consensus disorder prediction 248 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2586 Cmu-Chr5:34571610 Cmu11g0233 Cmu-Chr11:2800321 3.60E-132 dispersed
Cmu11g1667 Cmu-Chr11:28929823 Cmu05g2586 Cmu-Chr5:34571610 8.10E-64 dispersed
Cmu05g2586 Cmu-Chr5:34571610 Cmu11g0534 Cmu-Chr11:5829654 4.70E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75572 PF07714 PK_Tyr_Ser-Thr 2.60E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2586 - - - 0.0