Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2587 ATGAGAAGCTTTCAGGGAGCTCTGGAGTGTCTTAGAGCTTTAGTTGAGACTAAACTTTGGGATTATTGCATTGTTTGGAAATCAAGGGATGATTCTTCTTCCAGGTTCATTCATTGGGTTGGTTGCTGCTGTAGCGGTGGAGTTTCCGACGCCGGCGGGAAAGAGGAAGCCGGAGAGACGATCCCAGCTACTCTTTGTAAGGACACTCGATTTCGACATTTTAGAAGGACAAATGCTTGCCAAGCACTTGCTCAGTTCCCTTCTTCAATATCATTAAACTCTGGGGTCCATGGGGATGTTTCGATTTCGAATCAACCCACGTGGCTTACAAGTACTGAAGTTTCTTCTACTTCAACTTTTTCACATGAGTTGACTGGAACTCGAGTCCTAATTCCAGTTTCTGGTGGAATTGTGGAGCTTTTTGCTACAAAACATATGCCAAGAGAGGCAGAGGTTATAGACTACGTAATGGCTCACTGTAATGTCTCTCTGGAGCATGAATTTGAAACAGAAAGTGAACTGAATGCTGGCCTCAATGAGGAAAGACTCCATTCATCTACCAAATTCTATCCAATAAACTGCCCTGATCCTCAGCCCTTGCTTGATTTCAAATCCAAATTAGAAATTCTTCCTTCAGTGTCCCAGTCCAGTTCCTTTCCTAGCTGTGGTGAAGGATCATCCAGTGGCTCAAAGCCTTCCAATGAGCATCAATACTTTGATTCCTATTCAAGTTTGGTTTCTCGTGGACTCTTGAACCAACCAATTCACAGGTCTTTTGAATCGAAAGGGCCGATGCACCAAGAAGATTTGCTGGAACAACAAAGGGATGTGGCTTCAGAATATTCAAAGAGCTTGCAGAAAGATGAAGCCAAAACTGGAGGGAAACAAGGAAAGGAAGTTTTCAAATCCAAGAATCTCTTCACAGAGAGGAGAAGAAGAGACAAGATTCGGGATCGTCTCTATGCTCTACGTGCTTTAGTCCCTAATATATCCAAGATGGATAGAGCATCAATCATTGTGGATGCTATCAACTACATAAGAGAGTTGGAAGAGAATGTGAAAAGCCTCCAGAACGAACTCATTCAATTGGAGCATGAGGACTGTCAAAAGAACAAACACTTGAAGATTTCTCCATTAGAGAATAAAAATGATAACACTAATTGTTGGCCTCTGGTTCAGGATGATCAGCCAATGTTTATCCTTGGTGAGGAGAGGCCTATGGAGGTGGAAGTGGAAGTGATGCAAATTAATGAAAGAGATTTCTTAATCAAGCTATTATGCAAGCAAAAACAAGGCGGCGTAGTGAGCTCAATAGAGGCAATGGATTCATTGGGCTTGCAGGTTGTTGATGTCAATATTACAACCTTTGGGGGTATGGTCCTGAACATTTTCCATGTTGAGGCGAATGAAAATGACATTCAGCCAAAGAGATTAAGAGACTCACTGATCAAGCTAACAAGCAGAGAAATCAGATAA 1476 42.21 MRSFQGALECLRALVETKLWDYCIVWKSRDDSSSRFIHWVGCCCSGGVSDAGGKEEAGETIPATLCKDTRFRHFRRTNACQALAQFPSSISLNSGVHGDVSISNQPTWLTSTEVSSTSTFSHELTGTRVLIPVSGGIVELFATKHMPREAEVIDYVMAHCNVSLEHEFETESELNAGLNEERLHSSTKFYPINCPDPQPLLDFKSKLEILPSVSQSSSFPSCGEGSSSGSKPSNEHQYFDSYSSLVSRGLLNQPIHRSFESKGPMHQEDLLEQQRDVASEYSKSLQKDEAKTGGKQGKEVFKSKNLFTERRRRDKIRDRLYALRALVPNISKMDRASIIVDAINYIRELEENVKSLQNELIQLEHEDCQKNKHLKISPLENKNDNTNCWPLVQDDQPMFILGEERPMEVEVEVMQINERDFLIKLLCKQKQGGVVSSIEAMDSLGLQVVDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLIKLTSREIR 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34575696 34577862 - CmPI595203_05g025870.1 Cmu05g2587 417501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2587 491 MobiDBLite consensus disorder prediction 276 297 - -
Cmu05g2587 491 Coils Coil 339 366 - -
Cmu05g2587 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983(InterPro)
Cmu05g2587 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 365 IPR036638 GO:0046983(InterPro)
Cmu05g2587 491 SMART finulus 306 355 IPR011598 GO:0046983(InterPro)
Cmu05g2587 491 CDD ACT_UUR-ACR-like 440 484 - -
Cmu05g2587 491 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 157 IPR025610 -
Cmu05g2587 491 Gene3D - 294 367 IPR036638 GO:0046983(InterPro)
Cmu05g2587 491 Pfam Helix-loop-helix DNA-binding domain 308 350 IPR011598 GO:0046983(InterPro)
Cmu05g2587 491 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 261 484 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu05g2587 491 MobiDBLite consensus disorder prediction 215 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2587 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0423 Cmu-Chr2:3851255 Cmu05g2587 Cmu-Chr5:34575696 2.10E-60 dispersed
Cmu02g2150 Cmu-Chr2:35112660 Cmu05g2587 Cmu-Chr5:34575696 2.70E-16 dispersed
Cmu05g2587 Cmu-Chr5:34575696 Cmu11g1182 Cmu-Chr11:22833513 1.00E-17 dispersed
Cmu05g2587 Cmu-Chr5:34575696 Cmu06g1431 Cmu-Chr6:25553118 3.50E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g698 . . . . . . . . . . . . . . Sed04g0627 . Cpe01g01533 Bhi07g01732 Tan04g1237 Cmetu10g1279 . . . . Cla05g02543 Cam05g2733 Cec05g2764 Cco05g2804 Clacu05g2734 Cmu05g2587 Cre05g2701 . . . . Lsi04g00551 . Chy10g00903 . . . Bda07g01603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6294 PF14215 bHLH-MYC_N 8.90E-19 CL0161 Cmu TF