Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g2594 | ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTGTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA | 510 | 43.53 | MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFCDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34633135 | 34634205 | - | CmPI595203_05g025940.1 | Cmu05g2594 | 417508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g2594 | 169 | CDD | HMG-box_SF | 119 | 165 | - | - | |
Cmu05g2594 | 169 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 117 | 169 | IPR009071 | - | |
Cmu05g2594 | 169 | Gene3D | High mobility group box domain | 109 | 169 | IPR036910 | - | |
Cmu05g2594 | 169 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 165 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER) | |
Cmu05g2594 | 169 | Pfam | YABBY protein | 8 | 162 | IPR006780 | GO:0007275(InterPro) | |
Cmu05g2594 | 169 | SUPERFAMILY | HMG-box | 104 | 160 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2594 | Cmu-Chr5:34633135 | Cmu06g1183 | Cmu-Chr6:22736571 | 2.80E-31 | dispersed | |
Cmu05g2594 | Cmu-Chr5:34633135 | Cmu08g1726 | Cmu-Chr8:28652809 | 1.20E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6295 | PF04690 | YABBY | 1.10E-57 | CL0114 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g2594 | K25796 | - | csv:101211641 | 316.235 |