Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2594 ATGAACCATCTCTTTGAACTGCCTGAAAAGATTTGTTATGTGCAATGTGGAATTTGTACCACCATTTTGTTGGTCAGTGTGCCGTGCGGCAGCTTATCGATGGCGGTGACTGTGACGTGTGGCCACTGCTCGAGCCTCCTTTCTGTTAACATGATGAAAGCCACTCTGGTTCCTCTTCATTTTCTGTCTTCTTTATCTCGCAATGTGCCCAAAGAAGCTTGTAGAGAAATGAATTCAGGGAAGTTCTGTGACAGTTTCAAAAGACCAAACTTGAAATTTTCTGAGTATGAAGTTGAAGAAGGCTTGATTCCTGCCACACCTCCTTTTGTAAACAAACCTCCTGAGAAGAGACAACGTGCCCCATCAGCATACAACTGTTTCATCAAGGATGAAATCAGAAGGCTCAAAGCTCACAATCCGGAAATGACTCACAAGGAGGCCTTTAGAACAGCTGCAAAGAATTGGGCAAATTTCCCTCCAATCCAAGAAAAAGAAGACACAGAGAACTGA 510 43.53 MNHLFELPEKICYVQCGICTTILLVSVPCGSLSMAVTVTCGHCSSLLSVNMMKATLVPLHFLSSLSRNVPKEACREMNSGKFCDSFKRPNLKFSEYEVEEGLIPATPPFVNKPPEKRQRAPSAYNCFIKDEIRRLKAHNPEMTHKEAFRTAAKNWANFPPIQEKEDTEN 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34633135 34634205 - CmPI595203_05g025940.1 Cmu05g2594 417508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2594 169 CDD HMG-box_SF 119 165 - -
Cmu05g2594 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 117 169 IPR009071 -
Cmu05g2594 169 Gene3D High mobility group box domain 109 169 IPR036910 -
Cmu05g2594 169 PANTHER PROTEIN YABBY 6-RELATED 8 165 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0045165(PANTHER)|GO:0048481(PANTHER)
Cmu05g2594 169 Pfam YABBY protein 8 162 IPR006780 GO:0007275(InterPro)
Cmu05g2594 169 SUPERFAMILY HMG-box 104 160 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2594 Cmu-Chr5:34633135 Cmu06g1183 Cmu-Chr6:22736571 2.80E-31 dispersed
Cmu05g2594 Cmu-Chr5:34633135 Cmu08g1726 Cmu-Chr8:28652809 1.20E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6295 PF04690 YABBY 1.10E-57 CL0114 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2594 K25796 - csv:101211641 316.235