Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g2599 ATGGAAGAAATGTACGGTTTACAATCCACGGCGGAGTATTCAGATAAGGCCTTGATGTCGCCGGAGAATCTGATTCTTCCGCCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCAGCGGCGGCATCGGCGATTTCAGAAGCGGAAGCAGCATCGATCACGCCGGAAATTCGACGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCCACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACATACTGCGATATGTTGGTGAAGTACAAATTAGATCTCAAAAGGCCTTTCGACGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCTTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGACAAGGTTGCATTGGCAGAGAGAACGGGACTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATACAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGAGAGGACTGA 975 46.46 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIRREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKLDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLFEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENIQFEGMDGLSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34673380 34680111 + CmPI595203_05g025990.1 Cmu05g2599 417513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g2599 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677(InterPro)
Cmu05g2599 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g2599 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu05g2599 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu05g2599 324 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Cmu05g2599 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g2599 324 Gene3D - 239 311 - -
Cmu05g2599 324 SMART HOX_1 242 307 IPR001356 GO:0003677(InterPro)
Cmu05g2599 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g2599 324 CDD homeodomain 252 304 IPR001356 GO:0003677(InterPro)
Cmu05g2599 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu05g2599 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu05g2599 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677(InterPro)
Cmu05g2599 324 SMART ELK_2 220 241 IPR005539 GO:0003677(InterPro)
Cmu05g2599 324 Pfam ELK domain 220 241 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1806 Cmu-Chr5:28165876 Cmu05g2599 Cmu-Chr5:34673380 1.20E-71 dispersed
Cmu05g2599 Cmu-Chr5:34673380 Cmu08g1619 Cmu-Chr8:27880451 2.80E-64 dispersed
Cmu02g1487 Cmu-Chr2:28630265 Cmu05g2599 Cmu-Chr5:34673380 3.50E-71 transposed
Cmu08g1717 Cmu-Chr8:28608197 Cmu05g2599 Cmu-Chr5:34673380 2.00E-57 transposed
Cmu05g2599 Cmu-Chr5:34673380 Cmu06g1753 Cmu-Chr6:28568968 1.50E-70 wgd
Cmu05g2599 Cmu-Chr5:34673380 Cmu08g1715 Cmu-Chr8:28597193 1.80E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6296 PF03791 KNOX2 5.20E-24 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g2599 - - - 0.0